Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0337 ATGATGAACGAGGAGACTATTAGTATTAGTAGTATGGAAGACTCTGATTTTGCATTTCTAGAGTCGATTCGTCGGCACTTGCTCGGAGAATCGGAGCGAGAAGCTTCCGTCGTTGCTTCCGGTGAAAAAGCTCCGATCTTTGGTCGGAGTAGTAGTTTCAGTAACTTATACCCATGCCTGGCTGACAATTGGGGAGATTTGCCGCTCAGAGTTGACGATTCCGAAGACATGCTGATCGCCGGCATGCTCCGGGACGCCGTCGGAGTTGGATGGGTTCCGTCGCTAAATCCGGCTTCCTTTGAAAGTTGTGATTTTGGATTCTCGACGGTGAAATCGGAGCCGGAAATCATGCTTCCCGTGAACTTGATTCCGGAATTCGCCAATGCGAAGACGAAGCCGGCGGCGGTTCCAGTGAAGGGAAAACATTACAGAGGAGTACGGCAGCGGCCATGGGGGAAGTTCGCGGCGGAGATTAGGGATCCGGCGAAAAACGGTGCCAGGGTTTGGCTTGGAACTTTCGAGACGGCGGAGGACGCCGCAGTGGCTTATGACCGGGCGGCTTACCGGATGCGTGGGTCACGTGCGTTGCTGAATTTTCCGCTCCGTATAAATTCCGGTGAACCCGACCCGGTTCGGATCACATCTAAGAGAACCTCGCCGGAGCGTTCGTCGTCGCCAAAGGCGGTGAATGGATCGCCGAAGCGGCGGAAGAAGGTCGGCTCCGCCGTTGAAGCGGTGGAAATGGGTGGAGAAGTAAAATTGGAGGAACAAGTGGTAACTTTTACACGTGGAGGTCAGCTATTCGTTAGCCAATAA 816 53.68 MMNEETISISSMEDSDFAFLESIRRHLLGESEREASVVASGEKAPIFGRSSSFSNLYPCLADNWGDLPLRVDDSEDMLIAGMLRDAVGVGWVPSLNPASFESCDFGFSTVKSEPEIMLPVNLIPEFANAKTKPAAVPVKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAAVAYDRAAYRMRGSRALLNFPLRINSGEPDPVRITSKRTSPERSSSPKAVNGSPKRRKKVGSAVEAVEMGGEVKLEEQVVTFTRGGQLFVSQ 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2237797 2238612 - evm.model.ptg000001l.337 HCH5g0337 544489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0337 271 PRINTS Ethylene responsive element binding protein signature 143 154 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0337 271 PRINTS Ethylene responsive element binding protein signature 166 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0337 271 ProSiteProfiles AP2/ERF domain profile. 142 200 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0337 271 FunFam Ethylene-responsive transcription factor 2 141 201 - -
HCH5g0337 271 Pfam AP2 domain 142 193 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0337 271 MobiDBLite consensus disorder prediction 207 242 - -
HCH5g0337 271 CDD AP2 141 200 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0337 271 Gene3D AP2/ERF domain 141 203 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0337 271 PANTHER DNA-BINDING DOMAIN 128 236 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
HCH5g0337 271 SMART rav1_2 142 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0337 271 SUPERFAMILY DNA-binding domain 142 202 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0337 HCH-Chr5:2237797 HCH6g1043 HCH-Chr6:45154510 4.20E-84 dispersed
HCH5g0337 HCH-Chr5:2237797 HCH5g0338 HCH-Chr5:2245946 2.40E-23 tandem
HCH5g0337 HCH-Chr5:2237797 HCH6g1042 HCH-Chr6:45136959 4.90E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33588 PF00847 AP2 1.40E-13 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0337 K09286 - csv:101221583 345.51