Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0337 | ATGATGAACGAGGAGACTATTAGTATTAGTAGTATGGAAGACTCTGATTTTGCATTTCTAGAGTCGATTCGTCGGCACTTGCTCGGAGAATCGGAGCGAGAAGCTTCCGTCGTTGCTTCCGGTGAAAAAGCTCCGATCTTTGGTCGGAGTAGTAGTTTCAGTAACTTATACCCATGCCTGGCTGACAATTGGGGAGATTTGCCGCTCAGAGTTGACGATTCCGAAGACATGCTGATCGCCGGCATGCTCCGGGACGCCGTCGGAGTTGGATGGGTTCCGTCGCTAAATCCGGCTTCCTTTGAAAGTTGTGATTTTGGATTCTCGACGGTGAAATCGGAGCCGGAAATCATGCTTCCCGTGAACTTGATTCCGGAATTCGCCAATGCGAAGACGAAGCCGGCGGCGGTTCCAGTGAAGGGAAAACATTACAGAGGAGTACGGCAGCGGCCATGGGGGAAGTTCGCGGCGGAGATTAGGGATCCGGCGAAAAACGGTGCCAGGGTTTGGCTTGGAACTTTCGAGACGGCGGAGGACGCCGCAGTGGCTTATGACCGGGCGGCTTACCGGATGCGTGGGTCACGTGCGTTGCTGAATTTTCCGCTCCGTATAAATTCCGGTGAACCCGACCCGGTTCGGATCACATCTAAGAGAACCTCGCCGGAGCGTTCGTCGTCGCCAAAGGCGGTGAATGGATCGCCGAAGCGGCGGAAGAAGGTCGGCTCCGCCGTTGAAGCGGTGGAAATGGGTGGAGAAGTAAAATTGGAGGAACAAGTGGTAACTTTTACACGTGGAGGTCAGCTATTCGTTAGCCAATAA | 816 | 53.68 | MMNEETISISSMEDSDFAFLESIRRHLLGESEREASVVASGEKAPIFGRSSSFSNLYPCLADNWGDLPLRVDDSEDMLIAGMLRDAVGVGWVPSLNPASFESCDFGFSTVKSEPEIMLPVNLIPEFANAKTKPAAVPVKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAAVAYDRAAYRMRGSRALLNFPLRINSGEPDPVRITSKRTSPERSSSPKAVNGSPKRRKKVGSAVEAVEMGGEVKLEEQVVTFTRGGQLFVSQ | 271 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2237797 | 2238612 | - | evm.model.ptg000001l.337 | HCH5g0337 | 544489 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0337 | 271 | PRINTS | Ethylene responsive element binding protein signature | 143 | 154 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0337 | 271 | PRINTS | Ethylene responsive element binding protein signature | 166 | 182 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0337 | 271 | ProSiteProfiles | AP2/ERF domain profile. | 142 | 200 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0337 | 271 | FunFam | Ethylene-responsive transcription factor 2 | 141 | 201 | - | - | |
HCH5g0337 | 271 | Pfam | AP2 domain | 142 | 193 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0337 | 271 | MobiDBLite | consensus disorder prediction | 207 | 242 | - | - | |
HCH5g0337 | 271 | CDD | AP2 | 141 | 200 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0337 | 271 | Gene3D | AP2/ERF domain | 141 | 203 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0337 | 271 | PANTHER | DNA-BINDING DOMAIN | 128 | 236 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
HCH5g0337 | 271 | SMART | rav1_2 | 142 | 206 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0337 | 271 | SUPERFAMILY | DNA-binding domain | 142 | 202 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g0337 | HCH-Chr5:2237797 | HCH6g1043 | HCH-Chr6:45154510 | 4.20E-84 | dispersed | |
HCH5g0337 | HCH-Chr5:2237797 | HCH5g0338 | HCH-Chr5:2245946 | 2.40E-23 | tandem | |
HCH5g0337 | HCH-Chr5:2237797 | HCH6g1042 | HCH-Chr6:45136959 | 4.90E-24 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33588 | PF00847 | AP2 | 1.40E-13 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH5g0337 | K09286 | - | csv:101221583 | 345.51 |