Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0367 | ATGGTGAAGTTGGCTTTTGGTAGCATTGGTGACTCTTTCAGTGTCACTTCCCTCAAATCCTATCTCTCTGAGTTCATAGCCACCCTCCTCTTCGTCTTCGCCGGTGTCGGTTCCGCCATTGCTTTTAGTAAATTGACCGCCGGTGCAGCATTGGATCCTGCCGGCCTGGTGGCTGTGGCGGTGGCTCATGCATTTGCATTATTCGTGGGGGTGTCCATAGCGGCGAACATCTCCGGCGGCCATTTGAATCCGGCCGTCACCTTTGGTTTGGCCATCGGCGGCAACATCACCATCTTAACCGGGTTGTTCTATTGGATTGCTCAGTCTCTTGGCTCCATTATTGCCTGCCTCCTCCTCAAGTTTGTTACCAGCGGCGAGAGTATTCCAACCCACGGTGTGGCAGCGGGAGTAGGAGCAATTGAAGGGTTAGTGTTCGAGATAATAATCACCTTCGGTCTGGTCTACACAGTTTACGCTACAGCCGCAGATCCCAAAAAGGGTTCTCTTGGAACCATTGCTCCCATAGCCATTGGATTCGTTGTTGGGGCCAATATTCTTGCTGCCGGCCCATTTAGTGGTGGGTCCATGAACCCGGCCCGTTCTTTCGGCCCAGCTGTTGTTAGTTTAGATTTCTCTCAAATTTGGATCTACTGGCTCGGCCCATTAGTTGGCGGTGGGCTTGCTGGGCTTATTTATGGTGACGTTTTTATTGGTTCCTATGCCCCAATTCCAGTCTCCGGAGACTATGCTTAA | 753 | 51.66 | MVKLAFGSIGDSFSVTSLKSYLSEFIATLLFVFAGVGSAIAFSKLTAGAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQSLGSIIACLLLKFVTSGESIPTHGVAAGVGAIEGLVFEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFVVGANILAAGPFSGGSMNPARSFGPAVVSLDFSQIWIYWLGPLVGGGLAGLIYGDVFIGSYAPIPVSGDYA | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2387645 | 2389078 | - | evm.model.ptg000001l.367 | HCH5g0367 | 544519 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0367 | 250 | ProSitePatterns | MIP family signature. | 81 | 89 | IPR022357 | - | |
HCH5g0367 | 250 | PRINTS | Major intrinsic protein family signature | 145 | 163 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH5g0367 | 250 | PRINTS | Major intrinsic protein family signature | 178 | 200 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH5g0367 | 250 | PRINTS | Major intrinsic protein family signature | 100 | 119 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH5g0367 | 250 | PRINTS | Major intrinsic protein family signature | 63 | 87 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH5g0367 | 250 | PRINTS | Major intrinsic protein family signature | 215 | 235 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH5g0367 | 250 | PRINTS | Major intrinsic protein family signature | 19 | 38 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH5g0367 | 250 | CDD | MIP | 19 | 232 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH5g0367 | 250 | PANTHER | AQUAPORIN-8 | 4 | 238 | IPR034294 | GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) | |
HCH5g0367 | 250 | Gene3D | Glycerol uptake facilitator protein. | 2 | 241 | IPR023271 | - | |
HCH5g0367 | 250 | NCBIfam | MIP family channel protein | 23 | 232 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH5g0367 | 250 | SUPERFAMILY | Aquaporin-like | 14 | 238 | IPR023271 | - | |
HCH5g0367 | 250 | Pfam | Major intrinsic protein | 14 | 232 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH5g0367 | 250 | FunFam | Probable aquaporin TIP1-1 | 2 | 247 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH3g1317 | HCH-Chr3:50693490 | HCH5g0367 | HCH-Chr5:2387645 | 7.30E-75 | dispersed | |
HCH4g0334 | HCH-Chr4:2195407 | HCH5g0367 | HCH-Chr5:2387645 | 3.30E-72 | dispersed | |
HCH5g0367 | HCH-Chr5:2387645 | HCH9g0550 | HCH-Chr9:3606065 | 4.40E-80 | dispersed | |
HCH5g0367 | HCH-Chr5:2387645 | HCH4g1415 | HCH-Chr4:10392737 | 6.10E-98 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH5g0367 | K09873 | - | csv:101203925 | 433.335 |