Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0367 ATGGTGAAGTTGGCTTTTGGTAGCATTGGTGACTCTTTCAGTGTCACTTCCCTCAAATCCTATCTCTCTGAGTTCATAGCCACCCTCCTCTTCGTCTTCGCCGGTGTCGGTTCCGCCATTGCTTTTAGTAAATTGACCGCCGGTGCAGCATTGGATCCTGCCGGCCTGGTGGCTGTGGCGGTGGCTCATGCATTTGCATTATTCGTGGGGGTGTCCATAGCGGCGAACATCTCCGGCGGCCATTTGAATCCGGCCGTCACCTTTGGTTTGGCCATCGGCGGCAACATCACCATCTTAACCGGGTTGTTCTATTGGATTGCTCAGTCTCTTGGCTCCATTATTGCCTGCCTCCTCCTCAAGTTTGTTACCAGCGGCGAGAGTATTCCAACCCACGGTGTGGCAGCGGGAGTAGGAGCAATTGAAGGGTTAGTGTTCGAGATAATAATCACCTTCGGTCTGGTCTACACAGTTTACGCTACAGCCGCAGATCCCAAAAAGGGTTCTCTTGGAACCATTGCTCCCATAGCCATTGGATTCGTTGTTGGGGCCAATATTCTTGCTGCCGGCCCATTTAGTGGTGGGTCCATGAACCCGGCCCGTTCTTTCGGCCCAGCTGTTGTTAGTTTAGATTTCTCTCAAATTTGGATCTACTGGCTCGGCCCATTAGTTGGCGGTGGGCTTGCTGGGCTTATTTATGGTGACGTTTTTATTGGTTCCTATGCCCCAATTCCAGTCTCCGGAGACTATGCTTAA 753 51.66 MVKLAFGSIGDSFSVTSLKSYLSEFIATLLFVFAGVGSAIAFSKLTAGAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQSLGSIIACLLLKFVTSGESIPTHGVAAGVGAIEGLVFEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFVVGANILAAGPFSGGSMNPARSFGPAVVSLDFSQIWIYWLGPLVGGGLAGLIYGDVFIGSYAPIPVSGDYA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2387645 2389078 - evm.model.ptg000001l.367 HCH5g0367 544519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0367 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
HCH5g0367 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0367 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0367 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0367 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0367 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0367 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0367 250 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0367 250 PANTHER AQUAPORIN-8 4 238 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
HCH5g0367 250 Gene3D Glycerol uptake facilitator protein. 2 241 IPR023271 -
HCH5g0367 250 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0367 250 SUPERFAMILY Aquaporin-like 14 238 IPR023271 -
HCH5g0367 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0367 250 FunFam Probable aquaporin TIP1-1 2 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1317 HCH-Chr3:50693490 HCH5g0367 HCH-Chr5:2387645 7.30E-75 dispersed
HCH4g0334 HCH-Chr4:2195407 HCH5g0367 HCH-Chr5:2387645 3.30E-72 dispersed
HCH5g0367 HCH-Chr5:2387645 HCH9g0550 HCH-Chr9:3606065 4.40E-80 dispersed
HCH5g0367 HCH-Chr5:2387645 HCH4g1415 HCH-Chr4:10392737 6.10E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0367 K09873 - csv:101203925 433.335