Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0374 ATGGCATCTCTCACCTCTTCTTCCTTCATTTTCATATCCATTTCGTTACTATTCACCCAAATTTCAAGCTCTCCCACAAACTCAACAAAACATCACCAAAAATGGGTCGGACCCGTCGGCCACCGCGTGATAAACGTCCACGTGAATGGTTTCGGCCAGTTCGCCTCCGTCCAAGCCGCCGTCGATTCGGTCTCAGATAACAACAGAATCAACACCATCATTCAAATCAGCCCCGGATATTACGTAGAGAAGGTGGTGGTGCCGGCAACGAAGCCTTATATAACATTCCAAGGAGCCGGAAAAGAAGTAACGGTGATAGAGTGGCATGACCGGGCAGGAGACCGTGGTCCCAGCGGGCAACAGCTGCGTACTTACAGAACGGCTTCTGTTACAGTTTTTGCAAATTACTTCTCTGCCAGAAACATCAGCTTCAAGAATACGGCACCGGCGCCGATGCCAGGAATGCAGGGATGGCAAGCTGCGGCGTTCCGTATTTCCGGCGACAAAGCCTACTTTTCTGGGTGTGGGTTCTACGGAGCTCAAGATACACTTTGTGACGACGCCGGCCGCCATTACTTCAAGGAATGTTACATTGAAGGCTCCATTGATTTCATCTTTGGGAATGGCCGTTCCATGTATAAGGATTGTGAGCTGCACTCAATAGCTACCCGGTTCGGTTCGATAGCGGCCCAAGATAGAAAGACAGAAGAGGAGAGGACCGGGTTCGCATTTGTTCGGTGCAAGGTGACGGGTTCTGGACCTGTGTACGTGGGGCGGGCAATGGGCCAGTACTCGAGGATTGTCTACTCGTACACTTACTTCGCTGACGTGGTGGCCCACGGTGGATGGGATGACTGGGACCACGTCAGCAATAAAAACAAGACTGTATTTTTTGGAGTATACAAGTGCTGGGGCCCAGGAGCGGGGGCAGTAAGAGGAGTATCATGGGCCCAAGAGCTAGATTTCGAGAAGGCCCATCCATTTCTTGTTAAGAGCTTTGTCAATGGAAGGCACTGGATTGCACCCTCTGATGCTTAG 1038 51.06 MASLTSSSFIFISISLLFTQISSSPTNSTKHHQKWVGPVGHRVINVHVNGFGQFASVQAAVDSVSDNNRINTIIQISPGYYVEKVVVPATKPYITFQGAGKEVTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRKTEEERTGFAFVRCKVTGSGPVYVGRAMGQYSRIVYSYTYFADVVAHGGWDDWDHVSNKNKTVFFGVYKCWGPGAGAVRGVSWAQELDFEKAHPFLVKSFVNGRHWIAPSDA 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2431254 2434384 - evm.model.ptg000001l.374 HCH5g0374 544526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0374 345 SUPERFAMILY Pectin lyase-like 41 342 IPR011050 -
HCH5g0374 345 ProSitePatterns Pectinesterase signature 2. 198 207 IPR033131 -
HCH5g0374 345 FunFam Pectinesterase 39 342 - -
HCH5g0374 345 Pfam Pectinesterase 46 336 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH5g0374 345 Gene3D - 40 344 IPR012334 -
HCH5g0374 345 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 27 341 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0389 HCH-Chr1:51756649 HCH5g0374 HCH-Chr5:2431254 3.10E-77 dispersed
HCH5g0374 HCH-Chr5:2431254 HCH8g0695 HCH-Chr8:43665010 3.40E-83 dispersed
HCH5g0374 HCH-Chr5:2431254 HCH4g1103 HCH-Chr4:7208766 1.80E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0374 - - - 0.0