Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0390 ATGTCTGGTTGCAAAGATGAAGATCCTCGTATTCATGGTATCAGAACTAAGATTCGTGTGGTGCCTCATTTCCCTCAACCAGGTATTATGTTCCAAGACATAACCACTCTGCTACTTGACCCCAAAGCATTTAAAGACACTATTGATTTGTTTGTGGAGCGGTACAAAGGGAAGAACATTTCTGTTGTTGCAGGAGTTGAAGCCCGAGGATTTATATTTGGCCCTCCGATTGCATTGGCTATTGGAGCAAAATTTGTTCCTTTAAGGAAACCGAGGAAGTTACCTGGTGAAGTTATTTATGAAAAGTATGTTTTAGAATATGGAAGTGATTGCCTGGAGATGCATGTTGGAGCTGTCGAACGTCATGAACGGGCATTGGTGGTGGACGATTTGGTAGCGACTGGTGGCACTCTTTGTGCAGCTATTAATTTACTTGAACGTGCTGGAGCTGAAGTAATAGAATGTGCTTGCGTCATTGAATTGCCAGATTTAAAGGGTCGGGAGCGGTTGAATGGTAAGCCATTGTTTGTGCTAGTAGAGTACTATTAG 549 42.62 MSGCKDEDPRIHGIRTKIRVVPHFPQPGIMFQDITTLLLDPKAFKDTIDLFVERYKGKNISVVAGVEARGFIFGPPIALAIGAKFVPLRKPRKLPGEVIYEKYVLEYGSDCLEMHVGAVERHERALVVDDLVATGGTLCAAINLLERAGAEVIECACVIELPDLKGRERLNGKPLFVLVEYY 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2554070 2557773 - evm.model.ptg000001l.390 HCH5g0390 544542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0390 182 NCBIfam adenine phosphoribosyltransferase 15 181 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
HCH5g0390 182 Pfam Phosphoribosyl transferase domain 41 165 IPR000836 -
HCH5g0390 182 FunFam Adenine phosphoribosyltransferase 1 2 181 - -
HCH5g0390 182 Hamap Adenine phosphoribosyltransferase [apt]. 14 181 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
HCH5g0390 182 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 5 180 IPR050120 GO:0003999(PANTHER)|GO:0005829(PANTHER)
HCH5g0390 182 CDD PRTases_typeI 48 180 IPR000836 -
HCH5g0390 182 Gene3D - 2 181 IPR029057 -
HCH5g0390 182 SUPERFAMILY PRTase-like 12 175 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0390 K00759 - - csv:101216186 332.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0591 HCH-Chr4:3908342 HCH5g0390 HCH-Chr5:2554070 3.40E-75 dispersed
HCH4g0445 HCH-Chr4:2903373 HCH5g0390 HCH-Chr5:2554070 5.00E-76 transposed
HCH5g0390 HCH-Chr5:2554070 HCH6g0996 HCH-Chr6:44716325 5.80E-90 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g0445 . 33 188 PRT Gene Family AT1G80050 78.8 1.0e-66 249.6
HCH5g0390 . 30 180 PRT Gene Family AT1G80050 77.5 9.2e-63 236.5
HCH6g0996 . 30 180 PRT Gene Family AT1G80050 76.8 1.6e-62 235.7
HCH4g0591 . 104 256 PRT Gene Family AT1G80050 68.0 7.0e-55 210.3
HCH4g0445 . 1 148 PRT Gene Family AT5G11160 80.4 6.2e-62 233.8
HCH4g0591 . 82 219 PRT Gene Family AT5G11160 72.5 8.1e-54 206.8
HCH6g0996 . 8 145 PRT Gene Family AT5G11160 73.2 1.4e-53 206.1
HCH5g0390 . 8 145 PRT Gene Family AT5G11160 74.6 1.8e-53 205.7
HCH4g0591 . 75 257 PRT Gene Family AT1G27450 79.8 3.6e-79 291.2
HCH6g0996 . 1 180 PRT Gene Family AT1G27450 74.4 5.9e-74 273.9
HCH5g0390 . 7 180 PRT Gene Family AT1G27450 74.1 8.0e-71 263.5
HCH4g0445 . 11 183 PRT Gene Family AT1G27450 68.8 1.7e-65 245.7
HCH2g0502 . 72 554 PRT Gene Family AT2G16570 84.7 1.7e-241 832.0
HCH2g0502 . 72 554 PRT Gene Family AT4G34740 86.0 1.4e-243 839.0
HCH2g0502 . 1 527 PRT Gene Family AT4G38880 67.9 5.3e-200 694.1
HCH4g0591 . 75 257 PRT Gene Family AT1G27450 79.8 3.6e-79 291.2
HCH6g0996 . 1 180 PRT Gene Family AT1G27450 74.4 5.9e-74 273.9
HCH5g0390 . 7 180 PRT Gene Family AT1G27450 74.1 8.0e-71 263.5
HCH4g0445 . 11 183 PRT Gene Family AT1G27450 68.8 1.7e-65 245.7
HCH4g0445 . 33 188 PRT Gene Family AT1G80050 78.8 1.0e-66 249.6
HCH5g0390 . 30 180 PRT Gene Family AT1G80050 77.5 9.2e-63 236.5
HCH6g0996 . 30 180 PRT Gene Family AT1G80050 76.8 1.6e-62 235.7
HCH4g0591 . 104 256 PRT Gene Family AT1G80050 68.0 7.0e-55 210.3
HCH5g0390 . 1 97 PRT Gene Family AT4G22570 85.7 2.8e-44 174.5
HCH6g0996 . 5 97 PRT Gene Family AT4G22570 86.0 1.8e-43 171.8
HCH4g0591 . 77 171 PRT Gene Family AT4G22570 78.9 3.6e-39 157.5
HCH4g0445 . 11 100 PRT Gene Family AT4G22570 81.1 1.4e-38 155.6
HCH6g0996 . 1 96 PRT Gene Family AT4G12440 84.4 5.9e-41 163.3
HCH5g0390 . 1 96 PRT Gene Family AT4G12440 83.3 2.3e-40 161.4
HCH4g0591 . 75 170 PRT Gene Family AT4G12440 80.2 1.6e-38 155.2
HCH4g0445 . 4 99 PRT Gene Family AT4G12440 80.2 2.1e-38 154.8
HCH4g0445 . 1 148 PRT Gene Family AT5G11160 80.4 6.2e-62 233.8
HCH4g0591 . 82 219 PRT Gene Family AT5G11160 72.5 8.1e-54 206.8
HCH6g0996 . 8 145 PRT Gene Family AT5G11160 73.2 1.4e-53 206.1
HCH5g0390 . 8 145 PRT Gene Family AT5G11160 74.6 1.8e-53 205.7
HCH13g0264 . 1 186 PRT Gene Family AT1G71750 63.5 4.0e-68 254.6
HCH12g1342 . 16 469 PRT Gene Family AT1G55810 84.6 2.4e-225 778.1
HCH9g0068 . 19 481 PRT Gene Family AT1G55810 74.4 1.8e-201 698.7
HCH12g1342 . 66 468 PRT Gene Family AT3G27440 76.4 7.9e-183 636.7
HCH9g0068 . 79 481 PRT Gene Family AT3G27440 75.7 2.8e-180 628.2
HCH9g0068 . 1 481 PRT Gene Family AT3G27190 86.1 9.3e-244 839.3
HCH12g1342 . 3 468 PRT Gene Family AT3G27190 73.9 3.3e-209 724.5
HCH9g0712 . 27 287 PRT Gene Family AT3G53900 69.5 1.2e-103 373.2
HCH12g1342 . 1 469 PRT Gene Family AT4G26510 84.6 3.4e-235 810.8
HCH9g0068 . 5 481 PRT Gene Family AT4G26510 76.3 7.5e-214 740.0
HCH9g0068 . 1 481 PRT Gene Family AT5G40870 87.6 1.8e-247 851.7
HCH12g1342 . 3 471 PRT Gene Family AT5G40870 73.4 3.4e-209 724.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139