Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0398 | ATGTCATCTTCTTCTTCTTCCTCTTCTTCTCCTACTCCTACCTTGTCTCAGCAGCTGGACCACCATCATCACCACCATCTCCCTCCCACAGAACAGCTCTGTTACGTCCATTGCAACATTTGTGACACTGTCCTTGCGGTAAGTGTTCCTTGCTCAAGCTTGTTCAAAACTGTGACAGTCCGATGTGGGCACTGCACCAATCTCCTGCCTGTGAACATGAGAGGCCTTCTTCTGCCTTCTGCTAATCAGTTCCATCAGCTTGGCCACTCTTTCTTCTCTCCTTCTCATAACATTCTGGAAAACATCCCTAACGTCCCCAATTCTAATTTTCTCATCAACCAGTTTACTAATACCAACACTTTTAGTATGCCATCTCGAGGAGTTACTGATGAACTCCCAAGGCCACCAGTCATCAACAGACCTCCAGAGAAGAGACAGAGAGTGCCCTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGCGCCGCTGCCAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCAGACCAGACAGTGAAGAAGACAAACATGCGCCAGCAGGAAGGAGATCAGAATGTTCTGATGAAAGATGGCTTCTATGCCTCAGCCAATGTTGGTGTCTCCCATTTCTAA | 693 | 47.76 | MSSSSSSSSSPTPTLSQQLDHHHHHHLPPTEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHQLGHSFFSPSHNILENIPNVPNSNFLINQFTNTNTFSMPSRGVTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNMRQQEGDQNVLMKDGFYASANVGVSHF | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2620127 | 2622721 | - | evm.model.ptg000001l.398 | HCH5g0398 | 544550 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0398 | 230 | CDD | HMG-box_SF | 147 | 183 | - | - | |
HCH5g0398 | 230 | FunFam | Axial regulator YABBY | 138 | 209 | - | - | |
HCH5g0398 | 230 | SUPERFAMILY | HMG-box | 137 | 186 | IPR036910 | - | |
HCH5g0398 | 230 | Gene3D | High mobility group box domain | 138 | 210 | IPR036910 | - | |
HCH5g0398 | 230 | Pfam | YABBY protein | 29 | 193 | IPR006780 | GO:0007275(InterPro) | |
HCH5g0398 | 230 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
HCH5g0398 | 230 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
HCH5g0398 | 230 | PANTHER | PROTEIN YABBY 6-RELATED | 30 | 202 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER) | |
HCH5g0398 | 230 | MobiDBLite | consensus disorder prediction | 124 | 145 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0406 | HCH-Chr10:3243254 | HCH5g0398 | HCH-Chr5:2620127 | 1.30E-39 | dispersed | |
HCH1g0866 | HCH-Chr1:57206451 | HCH5g0398 | HCH-Chr5:2620127 | 4.30E-32 | dispersed | |
HCH5g0398 | HCH-Chr5:2620127 | HCH8g0848 | HCH-Chr8:44945370 | 6.80E-43 | dispersed | |
HCH1g1044 | HCH-Chr1:58316435 | HCH5g0398 | HCH-Chr5:2620127 | 1.90E-29 | transposed | |
HCH4g0030 | HCH-Chr4:194527 | HCH5g0398 | HCH-Chr5:2620127 | 3.10E-30 | transposed | |
HCH5g0398 | HCH-Chr5:2620127 | HCH6g0989 | HCH-Chr6:44653049 | 3.90E-75 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33594 | PF04690 | YABBY | 9.50E-72 | CL0114 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH5g0398 | K25796 | - | csv:101214748 | 380.178 |