Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0398 ATGTCATCTTCTTCTTCTTCCTCTTCTTCTCCTACTCCTACCTTGTCTCAGCAGCTGGACCACCATCATCACCACCATCTCCCTCCCACAGAACAGCTCTGTTACGTCCATTGCAACATTTGTGACACTGTCCTTGCGGTAAGTGTTCCTTGCTCAAGCTTGTTCAAAACTGTGACAGTCCGATGTGGGCACTGCACCAATCTCCTGCCTGTGAACATGAGAGGCCTTCTTCTGCCTTCTGCTAATCAGTTCCATCAGCTTGGCCACTCTTTCTTCTCTCCTTCTCATAACATTCTGGAAAACATCCCTAACGTCCCCAATTCTAATTTTCTCATCAACCAGTTTACTAATACCAACACTTTTAGTATGCCATCTCGAGGAGTTACTGATGAACTCCCAAGGCCACCAGTCATCAACAGACCTCCAGAGAAGAGACAGAGAGTGCCCTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGCGCCGCTGCCAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCAGACCAGACAGTGAAGAAGACAAACATGCGCCAGCAGGAAGGAGATCAGAATGTTCTGATGAAAGATGGCTTCTATGCCTCAGCCAATGTTGGTGTCTCCCATTTCTAA 693 47.76 MSSSSSSSSSPTPTLSQQLDHHHHHHLPPTEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHQLGHSFFSPSHNILENIPNVPNSNFLINQFTNTNTFSMPSRGVTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNMRQQEGDQNVLMKDGFYASANVGVSHF 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2620127 2622721 - evm.model.ptg000001l.398 HCH5g0398 544550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0398 230 CDD HMG-box_SF 147 183 - -
HCH5g0398 230 FunFam Axial regulator YABBY 138 209 - -
HCH5g0398 230 SUPERFAMILY HMG-box 137 186 IPR036910 -
HCH5g0398 230 Gene3D High mobility group box domain 138 210 IPR036910 -
HCH5g0398 230 Pfam YABBY protein 29 193 IPR006780 GO:0007275(InterPro)
HCH5g0398 230 MobiDBLite consensus disorder prediction 1 17 - -
HCH5g0398 230 MobiDBLite consensus disorder prediction 1 24 - -
HCH5g0398 230 PANTHER PROTEIN YABBY 6-RELATED 30 202 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
HCH5g0398 230 MobiDBLite consensus disorder prediction 124 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0398 K25796 - - csv:101214748 380.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0406 HCH-Chr10:3243254 HCH5g0398 HCH-Chr5:2620127 1.30E-39 dispersed
HCH1g0866 HCH-Chr1:57206451 HCH5g0398 HCH-Chr5:2620127 4.30E-32 dispersed
HCH5g0398 HCH-Chr5:2620127 HCH8g0848 HCH-Chr8:44945370 6.80E-43 dispersed
HCH1g1044 HCH-Chr1:58316435 HCH5g0398 HCH-Chr5:2620127 1.90E-29 transposed
HCH4g0030 HCH-Chr4:194527 HCH5g0398 HCH-Chr5:2620127 3.10E-30 transposed
HCH5g0398 HCH-Chr5:2620127 HCH6g0989 HCH-Chr6:44653049 3.90E-75 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0866 . 1 171 C2C2-YABBY Transcription Factor Family AT1G69180 57.1 5.5e-48 187.6
HCH5g0398 . 73 230 C2C2-YABBY Transcription Factor Family AT2G45190 62.0 9.5e-47 183.3
HCH2g1305 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 65.7 1.7e-52 202.6
HCH10g0406 . 5 182 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 1.2e-42 169.9
HCH5g0398 . 30 220 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 2.1e-42 169.1
HCH6g0989 . 18 198 C2C2-YABBY Transcription Factor Family AT1G08465 52.4 1.3e-41 166.4
HCH8g0848 . 5 172 C2C2-YABBY Transcription Factor Family AT1G08465 53.2 1.3e-41 166.4
HCH5g0398 . 40 229 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 7.3e-52 200.7
HCH6g0989 . 28 219 C2C2-YABBY Transcription Factor Family AT4G00180 51.2 1.8e-42 169.5
HCH1g1044 . 1 170 C2C2-YABBY Transcription Factor Family AT1G23420 56.0 6.8e-39 157.9
HCH4g0030 . 2 181 C2C2-YABBY Transcription Factor Family AT1G23420 51.1 2.8e-37 152.5
HCH10g0406 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 70.5 1.1e-60 229.6
HCH8g0848 . 7 172 C2C2-YABBY Transcription Factor Family AT2G26580 72.9 4.8e-59 224.2
HCH2g1305 . 1 170 C2C2-YABBY Transcription Factor Family AT2G26580 58.5 1.7e-48 189.1
HCH5g0398 . 30 194 C2C2-YABBY Transcription Factor Family AT2G26580 55.1 1.5e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33594 PF04690 YABBY 9.50E-72 CL0114 HCH TF