Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0398 ATGTCATCTTCTTCTTCTTCCTCTTCTTCTCCTACTCCTACCTTGTCTCAGCAGCTGGACCACCATCATCACCACCATCTCCCTCCCACAGAACAGCTCTGTTACGTCCATTGCAACATTTGTGACACTGTCCTTGCGGTAAGTGTTCCTTGCTCAAGCTTGTTCAAAACTGTGACAGTCCGATGTGGGCACTGCACCAATCTCCTGCCTGTGAACATGAGAGGCCTTCTTCTGCCTTCTGCTAATCAGTTCCATCAGCTTGGCCACTCTTTCTTCTCTCCTTCTCATAACATTCTGGAAAACATCCCTAACGTCCCCAATTCTAATTTTCTCATCAACCAGTTTACTAATACCAACACTTTTAGTATGCCATCTCGAGGAGTTACTGATGAACTCCCAAGGCCACCAGTCATCAACAGACCTCCAGAGAAGAGACAGAGAGTGCCCTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGCGCCGCTGCCAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCAGACCAGACAGTGAAGAAGACAAACATGCGCCAGCAGGAAGGAGATCAGAATGTTCTGATGAAAGATGGCTTCTATGCCTCAGCCAATGTTGGTGTCTCCCATTTCTAA 693 47.76 MSSSSSSSSSPTPTLSQQLDHHHHHHLPPTEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHQLGHSFFSPSHNILENIPNVPNSNFLINQFTNTNTFSMPSRGVTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNMRQQEGDQNVLMKDGFYASANVGVSHF 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2620127 2622721 - evm.model.ptg000001l.398 HCH5g0398 544550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0398 230 CDD HMG-box_SF 147 183 - -
HCH5g0398 230 FunFam Axial regulator YABBY 138 209 - -
HCH5g0398 230 SUPERFAMILY HMG-box 137 186 IPR036910 -
HCH5g0398 230 Gene3D High mobility group box domain 138 210 IPR036910 -
HCH5g0398 230 Pfam YABBY protein 29 193 IPR006780 GO:0007275(InterPro)
HCH5g0398 230 MobiDBLite consensus disorder prediction 1 17 - -
HCH5g0398 230 MobiDBLite consensus disorder prediction 1 24 - -
HCH5g0398 230 PANTHER PROTEIN YABBY 6-RELATED 30 202 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
HCH5g0398 230 MobiDBLite consensus disorder prediction 124 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0406 HCH-Chr10:3243254 HCH5g0398 HCH-Chr5:2620127 1.30E-39 dispersed
HCH1g0866 HCH-Chr1:57206451 HCH5g0398 HCH-Chr5:2620127 4.30E-32 dispersed
HCH5g0398 HCH-Chr5:2620127 HCH8g0848 HCH-Chr8:44945370 6.80E-43 dispersed
HCH1g1044 HCH-Chr1:58316435 HCH5g0398 HCH-Chr5:2620127 1.90E-29 transposed
HCH4g0030 HCH-Chr4:194527 HCH5g0398 HCH-Chr5:2620127 3.10E-30 transposed
HCH5g0398 HCH-Chr5:2620127 HCH6g0989 HCH-Chr6:44653049 3.90E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33594 PF04690 YABBY 9.50E-72 CL0114 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0398 K25796 - csv:101214748 380.178