Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0424 ATGGATGGAAGAGAAGGTGGTGGCGGTGGTGTAAGTAGTGGGGTTACAGTGCTGGGATCAGATGCTCCTTCTGACTATCATATAGCTCCGAGAATTGAGAACCCACCGCCGGCCGGTGGTTCAACTCCGGCGGCAGCTCCGGCGTCTCAAGTAGCTCAAATTTCCTCGGTGTCCGTTCCAGTTGGTGGTGTGCAAGCTCCAACGGCTACGGCGGCTTCCTCCGTGCCGGGGAAGAAAAAGAGAGGTAGGCCAAGGAAGTATGGACCAGATGGTTCTGTCACTATGCCGCTCTCTCCGAAGCCGATATCGTCGTCGGTGCCGCCACCGGTGATCGACTTCTCGGCGGAGAAGCGAGGGAAAGTCCGGCCGGCGAGTTCTGTGAGCAAAACTAAGTTTCAGCTGGATAATTTAGGTGACTGGGTCCCATGTTCCGTTGGTGCAAATTTTACACCTCATATCATCACTGTCAATTCCGGTGAGGATGTTACAATGAAGATAATATCCTTTTCACAACAAGGACCTCGAGCTATATGCATTTTGTCTGCAAATGGAGTGATCTCGAGTGTCACACTCCGTCAGCCCGATTCCTCTGGAGGAACACTGACATATGAGGGTCGCTTTGAAATACTATCATTGTCTGGCTCATTCATGCCCAATGATAGTGGAGGAACTAGGAGTAGATCTGGAGGAATGAGTGTTTCCTTAGCAAGTCCAGACGGACGTGTAGTAGGCGGTGGAGTAGCCGGTCTATTAGTAGCTGCAGGTCCTGTTCAGGTCGTAATAGGGAGTTTTCTGTCGGGAAACCAACACGAGCAGAAACCTAAAAAGCCGAAACACGATATCATATCAAACGCCGTGCCAACTGCTGCCATTCCAATATCATGTGCCGATCCCAAGTCCAACCTCTCATCTTCCACTTCCTTCCGTGGCGATAATTGGTCATTGCTGCCTCCAGATTCTAGGAATCAGCCAACTGATATTAATGTATCTCTACCTAGTGGATGA 1005 50.45 MDGREGGGGGVSSGVTVLGSDAPSDYHIAPRIENPPPAGGSTPAAAPASQVAQISSVSVPVGGVQAPTATAASSVPGKKKRGRPRKYGPDGSVTMPLSPKPISSSVPPPVIDFSAEKRGKVRPASSVSKTKFQLDNLGDWVPCSVGANFTPHIITVNSGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAAGPVQVVIGSFLSGNQHEQKPKKPKHDIISNAVPTAAIPISCADPKSNLSSSTSFRGDNWSLLPPDSRNQPTDINVSLPSG 334
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 2804270 2807748 - evm.model.ptg000001l.424 HCH5g0424 544576
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0424 334 MobiDBLite consensus disorder prediction 296 334 - -
HCH5g0424 334 CDD DUF296 150 241 IPR005175 -
HCH5g0424 334 FunFam AT-hook motif nuclear-localized protein 1-like 151 281 - -
HCH5g0424 334 Gene3D - 151 281 - -
HCH5g0424 334 MobiDBLite consensus disorder prediction 1 108 - -
HCH5g0424 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 268 - -
HCH5g0424 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 313 IPR039605 GO:0003680(InterPro)
HCH5g0424 334 ProSiteProfiles PPC domain profile profile. 146 288 IPR005175 -
HCH5g0424 334 MobiDBLite consensus disorder prediction 297 334 - -
HCH5g0424 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
HCH5g0424 334 MobiDBLite consensus disorder prediction 46 72 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0424 HCH-Chr5:2804270 HCH7g1547 HCH-Chr7:47928116 3.20E-94 dispersed
HCH5g0424 HCH-Chr5:2804270 HCH5g0428 HCH-Chr5:2860572 1.40E-20 proximal
HCH9g0523 HCH-Chr9:3379024 HCH5g0424 HCH-Chr5:2804270 2.10E-56 transposed
HCH11g1149 HCH-Chr11:43720186 HCH5g0424 HCH-Chr5:2804270 1.60E-66 wgd
HCH5g0424 HCH-Chr5:2804270 HCH5g0750 HCH-Chr5:5464660 1.60E-40 wgd
HCH5g0424 HCH-Chr5:2804270 HCH6g0969 HCH-Chr6:44513468 3.60E-122 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0424 - - - 0.0