Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g0424 | ATGGATGGAAGAGAAGGTGGTGGCGGTGGTGTAAGTAGTGGGGTTACAGTGCTGGGATCAGATGCTCCTTCTGACTATCATATAGCTCCGAGAATTGAGAACCCACCGCCGGCCGGTGGTTCAACTCCGGCGGCAGCTCCGGCGTCTCAAGTAGCTCAAATTTCCTCGGTGTCCGTTCCAGTTGGTGGTGTGCAAGCTCCAACGGCTACGGCGGCTTCCTCCGTGCCGGGGAAGAAAAAGAGAGGTAGGCCAAGGAAGTATGGACCAGATGGTTCTGTCACTATGCCGCTCTCTCCGAAGCCGATATCGTCGTCGGTGCCGCCACCGGTGATCGACTTCTCGGCGGAGAAGCGAGGGAAAGTCCGGCCGGCGAGTTCTGTGAGCAAAACTAAGTTTCAGCTGGATAATTTAGGTGACTGGGTCCCATGTTCCGTTGGTGCAAATTTTACACCTCATATCATCACTGTCAATTCCGGTGAGGATGTTACAATGAAGATAATATCCTTTTCACAACAAGGACCTCGAGCTATATGCATTTTGTCTGCAAATGGAGTGATCTCGAGTGTCACACTCCGTCAGCCCGATTCCTCTGGAGGAACACTGACATATGAGGGTCGCTTTGAAATACTATCATTGTCTGGCTCATTCATGCCCAATGATAGTGGAGGAACTAGGAGTAGATCTGGAGGAATGAGTGTTTCCTTAGCAAGTCCAGACGGACGTGTAGTAGGCGGTGGAGTAGCCGGTCTATTAGTAGCTGCAGGTCCTGTTCAGGTCGTAATAGGGAGTTTTCTGTCGGGAAACCAACACGAGCAGAAACCTAAAAAGCCGAAACACGATATCATATCAAACGCCGTGCCAACTGCTGCCATTCCAATATCATGTGCCGATCCCAAGTCCAACCTCTCATCTTCCACTTCCTTCCGTGGCGATAATTGGTCATTGCTGCCTCCAGATTCTAGGAATCAGCCAACTGATATTAATGTATCTCTACCTAGTGGATGA | 1005 | 50.45 | MDGREGGGGGVSSGVTVLGSDAPSDYHIAPRIENPPPAGGSTPAAAPASQVAQISSVSVPVGGVQAPTATAASSVPGKKKRGRPRKYGPDGSVTMPLSPKPISSSVPPPVIDFSAEKRGKVRPASSVSKTKFQLDNLGDWVPCSVGANFTPHIITVNSGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAAGPVQVVIGSFLSGNQHEQKPKKPKHDIISNAVPTAAIPISCADPKSNLSSSTSFRGDNWSLLPPDSRNQPTDINVSLPSG | 334 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2804270 | 2807748 | - | evm.model.ptg000001l.424 | HCH5g0424 | 544576 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g0424 | 334 | MobiDBLite | consensus disorder prediction | 296 | 334 | - | - | |
| HCH5g0424 | 334 | CDD | DUF296 | 150 | 241 | IPR005175 | - | |
| HCH5g0424 | 334 | FunFam | AT-hook motif nuclear-localized protein 1-like | 151 | 281 | - | - | |
| HCH5g0424 | 334 | Gene3D | - | 151 | 281 | - | - | |
| HCH5g0424 | 334 | MobiDBLite | consensus disorder prediction | 1 | 108 | - | - | |
| HCH5g0424 | 334 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 148 | 268 | - | - | |
| HCH5g0424 | 334 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 48 | 313 | IPR039605 | GO:0003680(InterPro) | |
| HCH5g0424 | 334 | ProSiteProfiles | PPC domain profile profile. | 146 | 288 | IPR005175 | - | |
| HCH5g0424 | 334 | MobiDBLite | consensus disorder prediction | 297 | 334 | - | - | |
| HCH5g0424 | 334 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 151 | 264 | IPR005175 | - | |
| HCH5g0424 | 334 | MobiDBLite | consensus disorder prediction | 46 | 72 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH5g0424 | HCH-Chr5:2804270 | HCH7g1547 | HCH-Chr7:47928116 | 3.20E-94 | dispersed | |
| HCH5g0424 | HCH-Chr5:2804270 | HCH5g0428 | HCH-Chr5:2860572 | 1.40E-20 | proximal | |
| HCH9g0523 | HCH-Chr9:3379024 | HCH5g0424 | HCH-Chr5:2804270 | 2.10E-56 | transposed | |
| HCH11g1149 | HCH-Chr11:43720186 | HCH5g0424 | HCH-Chr5:2804270 | 1.60E-66 | wgd | |
| HCH5g0424 | HCH-Chr5:2804270 | HCH5g0750 | HCH-Chr5:5464660 | 1.60E-40 | wgd | |
| HCH5g0424 | HCH-Chr5:2804270 | HCH6g0969 | HCH-Chr6:44513468 | 3.60E-122 | wgd |
Pathway information