Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0425 ATGGGGATCCTCATTTTCCCTTCATACATCATCTCTGTTTTGATCTTCTCTTATCTTCTTGTTCTTGCCCACTCTCACTCTACTGTAAAATACCTCCCTGGATTCCATGGTCCTCTTCCTTTCCATCTTGAAACTGGATATATTGGGGTGGGAGATTCAGAGGAAGTGCAGCTGTTTTACTATTTCATAAAATCAGAAGGAGACCCACAAAATGATCCTCTCATTCTTTGGCATATTGGTGGCCCTGGCTGCTCTGGTTTATCTGGGGTTGCCATTGATATGGGTCCTTTAAATTTCAAGATAGAGCCGTATAATGGGAGCTTGCCCACATTGATCTTAAACCCTTATTCATGGACAAAGAAATCGAGCATGATATTTATAGATTTGCCAGTGGGCACTGGATTCTCCTATGCTAAAACTCAACAAGCTCGCAAGACCGGAGATTTAAGTCAAGCTCGCCATTCTCATCTCTTTCTGCGAAAGTGGTTGATTGAGCATCCAGAATTCATATCCAACCCATTTTATGTTGGTGCTGATTCCTATGCTGGTCTGATTGCTCCAATTATCGTCCAAGAAATTATAAATGAAAACAAACACACTCTGCCATTTGTGAATCTCAAGGGATATATATTAGGGAATCCCTTTACAGTACGAGGTACGGTTGAAACTTCTGTCGTGCGTTATGCTCATAGAATGACTCTCATTCCAGATGAACTATTTGAGTCATTGGAGAGAAGCTGTAATGGAGAATATACGAATATTGATCCCAGTAATATTGAGTGTTTGAAACATTACAATACTTACCTAAAGTGTACTTCAAGAATTAAAAAGGATCACATTTTAATGCCTGATTGTCCTGAAGAAGAACCTCCTAAAAGATCTCTCCACACCATTCTCAAATCAGTAATTGATCAAGAAGAACCATCTCTTACAACAGATTGCCCTAATTATGTGCATGTACTTTCTGACCATTGGGCCAATACTGATCAAGTTCAGAAAGCACTTCACATACGCGAGGGAAGCATTAGAGGAGAATGGATAAGATGCAATCATAATTTAGATTACAATCAAGATGTTAATAGTGTTTTACCATATCATATGAACATTAGCTTTAAAGGTTATCGCTCTTTGATATATAGTGGAGATCATGACATGTCAGTACCTCACATAGACACTGAAGCATGGATTAAATTGTTGAATCATTCAATAGTTGATGATTGGAGGCCATGGTTCATTGCTGGTCAAATTGCTGGGTACACGAGGAGTTATTCAAGTAAGATGACATATGTGACTTTAAAGGGTGGAGGGCACACGGCGTACTTCATGGCGAAACAATGTGATGAAATGTTTAGTAGATGGATTGTTGGTGATTCTTTGTAA 1380 38.99 MGILIFPSYIISVLIFSYLLVLAHSHSTVKYLPGFHGPLPFHLETGYIGVGDSEEVQLFYYFIKSEGDPQNDPLILWHIGGPGCSGLSGVAIDMGPLNFKIEPYNGSLPTLILNPYSWTKKSSMIFIDLPVGTGFSYAKTQQARKTGDLSQARHSHLFLRKWLIEHPEFISNPFYVGADSYAGLIAPIIVQEIINENKHTLPFVNLKGYILGNPFTVRGTVETSVVRYAHRMTLIPDELFESLERSCNGEYTNIDPSNIECLKHYNTYLKCTSRIKKDHILMPDCPEEEPPKRSLHTILKSVIDQEEPSLTTDCPNYVHVLSDHWANTDQVQKALHIREGSIRGEWIRCNHNLDYNQDVNSVLPYHMNISFKGYRSLIYSGDHDMSVPHIDTEAWIKLLNHSIVDDWRPWFIAGQIAGYTRSYSSKMTYVTLKGGGHTAYFMAKQCDEMFSRWIVGDSL 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2815330 2824320 + evm.model.ptg000001l.425 HCH5g0425 544577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0425 459 Gene3D - 313 458 - -
HCH5g0425 459 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 25 453 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
HCH5g0425 459 SUPERFAMILY alpha/beta-Hydrolases 28 454 IPR029058 -
HCH5g0425 459 FunFam Carboxypeptidase 312 459 - -
HCH5g0425 459 Pfam Serine carboxypeptidase 33 455 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH5g0425 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH5g0425 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH5g0425 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH5g0425 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 427 440 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH5g0425 459 FunFam Serine carboxypeptidase-like 11 23 459 - -
HCH5g0425 459 Gene3D alpha/beta hydrolase 23 295 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0547 HCH-Chr12:3210786 HCH5g0425 HCH-Chr5:2815330 1.40E-180 dispersed
HCH12g0548 HCH-Chr12:3214377 HCH5g0425 HCH-Chr5:2815330 1.90E-177 dispersed
HCH12g0549 HCH-Chr12:3219401 HCH5g0425 HCH-Chr5:2815330 1.70E-152 dispersed
HCH12g0550 HCH-Chr12:3222673 HCH5g0425 HCH-Chr5:2815330 2.70E-37 dispersed
HCH5g0425 HCH-Chr5:2815330 HCH8g0282 HCH-Chr8:15652631 2.40E-92 dispersed
HCH5g0425 HCH-Chr5:2815330 HCH4g1140 HCH-Chr4:7481580 2.80E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0425 K16296 - csv:101207623 531.561