Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0428 ATGGATGCTCACTCTCTACCACCTCCTTTTCATACTACTAGAGACTTCCATCTTCACCACCAGCAGCAACAGCAACAATTCCATCACCAACAGCACAATTCTGAGGAAGAGCAAAGTGGAACAACCAGCGGTGCCGGCCTCAGCCGTGCCCTCAAACGAGATCGGGATGATAATAGCGATAACGCGGTTACGAACGGAGGAGACGGCAGCAGCAGCAAGGAATTTGGAGGTGCCGGCGATGGAGAAATCACTAGAAGACCTAGAGGAAGACCTGCTGGATCCAAGAACAAACCCAAACCTCCCATCATCATCACACGAGACAGTGCTAATGCTCTTCGGACACATGTCATCGAGGTCACCGATGGCTGCGACATCGTCGAGAGCGTTGCTACCTTCGCACGCCGACGCCAGAGAGGGGTTTGTATTATGAGCGGTACCGGTACCGTCACCAATGTCACTCTCCGGCAACCAGCTTCCCCGGGTGCAATTGTCAATTTACATGGAAGGTTTGAGATCTTATCTCTAGCCGGCTCATTTTTGCCACCACCAGCACCTCCAGCAGCCACCAGCTTGACAATATATCTAGCCGGCGGGCAAGGACAAGTCGTTGGGGGAAGCGTTGTCGGGACGCTTATCGCATCAGGTCCGGTAGTTATCATGGCGGCCTCGTTTAGCAACGCTGCTTATGAACGGCTTCCGTTGGAGGACGACGATCAGCCACCGCTGCCATCATTGCAAGGTGGCGGAATTGGATCGCCGGATGAAGTTGGTCAGTCGCAGCCACCGCAAACCCCGCATCAGCAGCAGCAACAGCAACTTCTCGGCGATGGAAACCCGCCATTGTTTCATGGACTTCCTCCAAATCTCTTAAACTCAATTCAAATGCCATCTGAAGCAGCTTTCTGGGCAAATAGTGGTGCTCGTCCTCCTTACTAA 936 53.1 MDAHSLPPPFHTTRDFHLHHQQQQQQFHHQQHNSEEEQSGTTSGAGLSRALKRDRDDNSDNAVTNGGDGSSSKEFGGAGDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVESVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATSLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGGIGSPDEVGQSQPPQTPHQQQQQQLLGDGNPPLFHGLPPNLLNSIQMPSEAAFWANSGARPPY 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2860572 2861507 + evm.model.ptg000001l.428 HCH5g0428 544580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0428 311 CDD DUF296 113 180 IPR005175 -
HCH5g0428 311 Gene3D - 112 240 - -
HCH5g0428 311 MobiDBLite consensus disorder prediction 256 276 - -
HCH5g0428 311 FunFam AT-hook motif nuclear-localized protein 112 239 - -
HCH5g0428 311 MobiDBLite consensus disorder prediction 1 104 - -
HCH5g0428 311 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 311 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
HCH5g0428 311 MobiDBLite consensus disorder prediction 234 290 - -
HCH5g0428 311 Pfam Plants and Prokaryotes Conserved (PCC) domain 113 225 IPR005175 -
HCH5g0428 311 SUPERFAMILY AF0104/ALDC/Ptd012-like 109 240 - -
HCH5g0428 311 ProSiteProfiles PPC domain profile profile. 109 248 IPR005175 -
HCH5g0428 311 PIRSF ESCAROLA 10 310 IPR014476 GO:0003680(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0700 HCH-Chr10:6411306 HCH5g0428 HCH-Chr5:2860572 1.10E-66 dispersed
HCH4g0281 HCH-Chr4:1807341 HCH5g0428 HCH-Chr5:2860572 4.30E-49 dispersed
HCH5g0428 HCH-Chr5:2860572 HCH7g1551 HCH-Chr7:47972397 2.80E-84 dispersed
HCH5g0424 HCH-Chr5:2804270 HCH5g0428 HCH-Chr5:2860572 1.40E-20 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0428 - - - 0.0