Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0455 ATGGCTTCTTACTTTGGTTCTTGGAGCTTCAATTTCTTGTTGGTGGCATTGGTGTTGGTGACCATCAGCAAATCAACTGTTGCTGTTTTCAAACCAAGCTCATGGCAGCTTGCCCATGCCACTTTTTATGGGGATGAAACAGCCTCCGCCACTATGGGAGGAGCTTGTGGTTATGGAAACTTGTTCACCAATGGCTATGGAACAGATACAGCGGCATTGAGCTCTACACTTTTCAACAATGGCTACGCTTGCGGGACTTGCTTCCAGATAAAGTGTGTGCAATCAAAAGCGTGTTATGCCAACGCGCCGATCACGACGGTCACCGCCACCAACATCTGCCCGCCGAACTGGGCACAGGACTCCAACGCCGGTGGCTGGTGCAATCCCCCTAGGGTTCACTTTGACATGGCCAAACCTGCTTTCATGAAGATTGCTTTGTGGAAGGCTGGCATTATTCCCGTTCAATATCGCAGGGTTCCATGTGCAAGGAAAGGAGGTGTAAGATTGAGTTTCCAAGGAAATGGGTACTGGTTATTGGTATACGTAATGAATGTGGGAGGAGGAGGAGACGTATCATCAATGGCAGTAAAAGGAAGCAAAACAGGATGGATAAACATGAGCCACAACTGGGGAGCTTCTTATCAAGCATTTGCTTCATTGGGTGGACAAATCCTTTCTTTCAGAATCACTTCTTACACTACTAAAGAAACCATTACCCTTTGGAATGTCATTCCTTCTAATTGGCAAGTGGGTTTGACTTACAATTCTGCCCTTAACTTTCTTTGA 786 46.44 MASYFGSWSFNFLLVALVLVTISKSTVAVFKPSSWQLAHATFYGDETASATMGGACGYGNLFTNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANAPITTVTATNICPPNWAQDSNAGGWCNPPRVHFDMAKPAFMKIALWKAGIIPVQYRRVPCARKGGVRLSFQGNGYWLLVYVMNVGGGGDVSSMAVKGSKTGWINMSHNWGASYQAFASLGGQILSFRITSYTTKETITLWNVIPSNWQVGLTYNSALNFL 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3064844 3066550 + evm.model.ptg000001l.455 HCH5g0455 544607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0455 261 CDD DPBB_EXPA_N 35 161 - -
HCH5g0455 261 PANTHER EXPANSIN-A15 14 255 IPR002963 GO:0009664(InterPro)
HCH5g0455 261 SUPERFAMILY Barwin-like endoglucanases 15 184 IPR036908 -
HCH5g0455 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576(InterPro)
HCH5g0455 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576(InterPro)
HCH5g0455 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576(InterPro)
HCH5g0455 261 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576(InterPro)
HCH5g0455 261 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576(InterPro)
HCH5g0455 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576(InterPro)
HCH5g0455 261 Pfam Lytic transglycolase 70 156 IPR009009 -
HCH5g0455 261 Gene3D - 20 162 IPR036908 -
HCH5g0455 261 PRINTS Expansin signature 165 177 IPR002963 GO:0009664(InterPro)
HCH5g0455 261 PRINTS Expansin signature 177 198 IPR002963 GO:0009664(InterPro)
HCH5g0455 261 PRINTS Expansin signature 124 141 IPR002963 GO:0009664(InterPro)
HCH5g0455 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664(InterPro)
HCH5g0455 261 PRINTS Expansin signature 141 154 IPR002963 GO:0009664(InterPro)
HCH5g0455 261 PRINTS Expansin signature 105 115 IPR002963 GO:0009664(InterPro)
HCH5g0455 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664(InterPro)
HCH5g0455 261 Pfam Expansin C-terminal domain 167 245 IPR007117 -
HCH5g0455 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 256 IPR007117 -
HCH5g0455 261 SUPERFAMILY PHL pollen allergen 163 256 IPR036749 -
HCH5g0455 261 Gene3D - 166 261 IPR036749 -
HCH5g0455 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 166 IPR007112 -
HCH5g0455 261 SMART dpbb_1 70 156 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0455 HCH-Chr5:3064844 HCH6g0949 HCH-Chr6:44316205 1.10E-118 dispersed
HCH5g0455 HCH-Chr5:3064844 HCH3g1367 HCH-Chr3:51405928 1.30E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0455 - - - 0.0