Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g0459 | ATGGTGAGGGGGAAAACTCAGATGAAGAGGATAGAGAATGCTACAAGCAGGCAAGTGACTTTCTCCAAACGCAGAAATGGACTGCTGAAGAAAGCCTTTGAGCTTTCTGTTCTTTGTGATGCAGAAGTTGCACTTATCATCTTCTCTCCAAGAGGGAAGCTTTATGAGTTTTCCAGTTGCAGTATTCACAAGACAATAGAGCGCTATCAGAATAGAACCAAAGACTTGGCATCTACCAACGATGCAGCTGCCCTAGATCATGATATGCAGCTGGAGAAGGAATATGACTCCTTCAACATAAGCAAGAAGTTAGAGCACCTTGAAGTTTCTAAGAGAAAACTATTGGGAGAGGGCTTGAATTTGTGTTCTATTGAAGAGTTGCAGCAGCTTGAAAGGCAACTGGAAAGAAGCCTAAGCAAAATTAGGTCAAGAAAGTATCAAATAATGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAGAGGTTGATGGAAGAAAATGCAGAATTACAGAAACAGGTTGGAATGGAATCAGCAAAAAAACCAGAAACCAAACAGAGAGAAATAAACGACCAAAATAGAACCATGGATGTAGAGACTGAGCTGTTCATTGGACCACCAGAAACAAGAAGCAATAATTGCTTCCTCTAG | 651 | 40.71 | MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSIHKTIERYQNRTKDLASTNDAAALDHDMQLEKEYDSFNISKKLEHLEVSKRKLLGEGLNLCSIEELQQLERQLERSLSKIRSRKYQIMKEEIMKLKEEEKRLMEENAELQKQVGMESAKKPETKQREINDQNRTMDVETELFIGPPETRSNNCFL | 216 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3088096 | 3092337 | - | evm.model.ptg000001l.459 | HCH5g0459 | 544611 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g0459 | 216 | Coils | Coil | 124 | 144 | - | - | |
| HCH5g0459 | 216 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 186 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| HCH5g0459 | 216 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH5g0459 | 216 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH5g0459 | 216 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH5g0459 | 216 | SUPERFAMILY | SRF-like | 3 | 74 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH5g0459 | 216 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH5g0459 | 216 | Pfam | K-box region | 90 | 174 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| HCH5g0459 | 216 | ProSiteProfiles | K-box domain profile. | 90 | 180 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| HCH5g0459 | 216 | Coils | Coil | 146 | 176 | - | - | |
| HCH5g0459 | 216 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH5g0459 | 216 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH5g0459 | 216 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH5g0459 | 216 | FunFam | Agamous-like MADS-box protein AGL13 | 13 | 79 | - | - | |
| HCH5g0459 | 216 | CDD | MADS_MEF2_like | 3 | 78 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| HCH5g0459 | 216 | Gene3D | - | 14 | 91 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g1176 | HCH-Chr13:38373318 | HCH5g0459 | HCH-Chr5:3088096 | 2.60E-52 | dispersed | |
| HCH5g0459 | HCH-Chr5:3088096 | HCH7g1576 | HCH-Chr7:48136186 | 2.80E-51 | dispersed | |
| HCH11g1176 | HCH-Chr11:44079319 | HCH5g0459 | HCH-Chr5:3088096 | 2.00E-31 | wgd | |
| HCH5g0459 | HCH-Chr5:3088096 | HCH5g0768 | HCH-Chr5:5694308 | 1.60E-41 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33598 | PF01486 | K-box | 9.30E-23 | No_clan | HCH | TF |
Pathway information