Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0459 ATGGTGAGGGGGAAAACTCAGATGAAGAGGATAGAGAATGCTACAAGCAGGCAAGTGACTTTCTCCAAACGCAGAAATGGACTGCTGAAGAAAGCCTTTGAGCTTTCTGTTCTTTGTGATGCAGAAGTTGCACTTATCATCTTCTCTCCAAGAGGGAAGCTTTATGAGTTTTCCAGTTGCAGTATTCACAAGACAATAGAGCGCTATCAGAATAGAACCAAAGACTTGGCATCTACCAACGATGCAGCTGCCCTAGATCATGATATGCAGCTGGAGAAGGAATATGACTCCTTCAACATAAGCAAGAAGTTAGAGCACCTTGAAGTTTCTAAGAGAAAACTATTGGGAGAGGGCTTGAATTTGTGTTCTATTGAAGAGTTGCAGCAGCTTGAAAGGCAACTGGAAAGAAGCCTAAGCAAAATTAGGTCAAGAAAGTATCAAATAATGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAGAGGTTGATGGAAGAAAATGCAGAATTACAGAAACAGGTTGGAATGGAATCAGCAAAAAAACCAGAAACCAAACAGAGAGAAATAAACGACCAAAATAGAACCATGGATGTAGAGACTGAGCTGTTCATTGGACCACCAGAAACAAGAAGCAATAATTGCTTCCTCTAG 651 40.71 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSIHKTIERYQNRTKDLASTNDAAALDHDMQLEKEYDSFNISKKLEHLEVSKRKLLGEGLNLCSIEELQQLERQLERSLSKIRSRKYQIMKEEIMKLKEEEKRLMEENAELQKQVGMESAKKPETKQREINDQNRTMDVETELFIGPPETRSNNCFL 216
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 3088096 3092337 - evm.model.ptg000001l.459 HCH5g0459 544611
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0459 216 Coils Coil 124 144 - -
HCH5g0459 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH5g0459 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH5g0459 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH5g0459 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH5g0459 216 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH5g0459 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH5g0459 216 Pfam K-box region 90 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH5g0459 216 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH5g0459 216 Coils Coil 146 176 - -
HCH5g0459 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH5g0459 216 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH5g0459 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH5g0459 216 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
HCH5g0459 216 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH5g0459 216 Gene3D - 14 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1176 HCH-Chr13:38373318 HCH5g0459 HCH-Chr5:3088096 2.60E-52 dispersed
HCH5g0459 HCH-Chr5:3088096 HCH7g1576 HCH-Chr7:48136186 2.80E-51 dispersed
HCH11g1176 HCH-Chr11:44079319 HCH5g0459 HCH-Chr5:3088096 2.00E-31 wgd
HCH5g0459 HCH-Chr5:3088096 HCH5g0768 HCH-Chr5:5694308 1.60E-41 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33598 PF01486 K-box 9.30E-23 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0459 - - - 0.0