Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0461 ATGCAAGAACCTGGGTTAGGAATGTTGACTTCTGGTGGTTCTAGTGCTTTAAACGGCGAAGTTTCAATCTCCGGCGAGGCTCCGACCGCCCAACTTAAGCCGGAGATTGCTACTCATCCACTTTATGAACAGCTTCTATCAGCACATGTTGCTTGTCTTCGAGTTGCTACTCCTATTGATCAGTTGCCATTGATCGATGCTCAGTTGTCTCAGTCTCATCATATTTTGCGTTCCTATGCTTCTCAGCATCATCAACAAGGCCATTCTTTATCGCCTCATGACCGTCACGAGCTCGATAACTTTCTGGCGCAGTATTTAATTGTGTTGTGCTCATTTAAGGAGCAGCTTCAACAACATGTAAGAGTTCATGCAGTAGAAGCTGTCATGGCTTGCCGTGAAATTGAAAATACTTTACAAGCCCTTACTGGAGTGAGTCTGGGTGAGGGTACTGGTGCAACAATGTCAGACGACGAAGATGATCTACCGATGGATTTCTCGCTTGATCAATCCGGTGCTGAGGCACATGACATGATGGGATTTGGGCCACTGCTTCCTACAGAATCTGAAAGGTCTTTGATGGAGAGAGTTCGACAGGAATTGAAGATTGAGCTCAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAGATATTAAGAAAAAGAAGGGCAGGGAAGTTACCTGGGGATACAACTACAGTGTTGAAAAACTGGTGGCAGCAACATTCTAAGTGGCCATATCCAACTGAAGATGACAAGGCAAAGCTGGTAGAGGAAACTGGATTGCAACTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGCGGAATTGGCACAGCAACTCTCAGTCAGTTACATCCTTGAAGTCCAAGCGCAAGAGATAA 891 44.67 MQEPGLGMLTSGGSSALNGEVSISGEAPTAQLKPEIATHPLYEQLLSAHVACLRVATPIDQLPLIDAQLSQSHHILRSYASQHHQQGHSLSPHDRHELDNFLAQYLIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDLPMDFSLDQSGAEAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3108955 3112667 + evm.model.ptg000001l.461 HCH5g0461 544613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0461 296 MobiDBLite consensus disorder prediction 1 21 - -
HCH5g0461 296 SMART HOX_1 221 286 IPR001356 GO:0003677(InterPro)
HCH5g0461 296 ProSiteProfiles ELK domain profile. 199 219 IPR005539 GO:0003677(InterPro)
HCH5g0461 296 FunFam homeobox protein knotted-1-like 3 isoform X1 220 281 - -
HCH5g0461 296 SMART KNOX2_2 88 143 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH5g0461 296 Gene3D - 218 292 - -
HCH5g0461 296 Pfam KNOX2 domain 92 142 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH5g0461 296 SMART KNOX1_2 30 74 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH5g0461 296 Pfam KNOX1 domain 32 73 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH5g0461 296 SUPERFAMILY Homeodomain-like 221 286 IPR009057 -
HCH5g0461 296 CDD homeodomain 222 283 IPR001356 GO:0003677(InterPro)
HCH5g0461 296 ProSiteProfiles 'Homeobox' domain profile. 219 282 IPR001356 GO:0003677(InterPro)
HCH5g0461 296 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 45 282 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH5g0461 296 MobiDBLite consensus disorder prediction 7 21 - -
HCH5g0461 296 Pfam Homeobox KN domain 239 278 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0456 HCH-Chr4:2948091 HCH5g0461 HCH-Chr5:3108955 3.20E-101 dispersed
HCH5g0461 HCH-Chr5:3108955 HCH7g0260 HCH-Chr7:1790952 2.30E-27 dispersed
HCH5g0461 HCH-Chr5:3108955 HCH12g0393 HCH-Chr12:2235004 4.00E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33599 PF03791 KNOX2 1.50E-17 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0461 - - - 0.0