Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0471 ATGGATTCCTACACACATTTTTCCGATCCCCATCCTTTTTCTTATAATTTCTCTGACAATTCCGAGTCCTCTGCGTTGTCTGACGCTGGGAACGGAATAGGAACCTCAACCTTTCATTCTGATGAAGAATTTGTACTAGCATCCAGCCGGCCTAAGAAGCGGGCCGGTCGGAGGGTTTTTAAGGAAACAAGGCACCCGGTTTATAGAGGTGTACGGAGGAGGAATAATAACAAGTGGGTCTGTGAGTTACGTGAGCCGAATAAGAAGACGAGGATTTGGCTCGGGACGTACCCGACGGCGGAGATGGCGGCTCGTGCACATGATGTGGCTGCGTTGGCTTTGAGAGGGAAGTCAGCGTGTCTTAACTTTGCTGACTCTGCATGGAGGTTTCCGATTCCGGCTTCTAATGATCCGAATGATATAAGGGTCGCGGCTTCTCATGCGGCGAATGAATGTAAGGATGAGGAAAACGACGTCGTGGAAACGGAGGCTGCCGGTGATCGGGAAATGGTCTATAATGACGAGGAGGATTTGTCGAATATGCCGATGTTGCTATCTAGTATGGCAGAAGGGCTTCTTCTTTCTCCGCCTAGCTTCTATATTTGTGATGACGTGGAATGGAATGACGAGGCTGTTGGTGCTGACGTGTCCTTATGGAATTTTTGA 666 48.95 MDSYTHFSDPHPFSYNFSDNSESSALSDAGNGIGTSTFHSDEEFVLASSRPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCELREPNKKTRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSAWRFPIPASNDPNDIRVAASHAANECKDEENDVVETEAAGDREMVYNDEEDLSNMPMLLSSMAEGLLLSPPSFYICDDVEWNDEAVGADVSLWNF 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3190079 3190744 - evm.model.ptg000001l.471 HCH5g0471 544623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0471 221 FunFam Ethylene-responsive transcription factor 2 66 125 - -
HCH5g0471 221 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0471 221 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0471 221 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0471 221 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677(InterPro)
HCH5g0471 221 CDD AP2 68 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0471 221 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0471 221 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 22 221 IPR045277 GO:0003700(InterPro)
HCH5g0471 221 Pfam AP2 domain 66 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0471 221 SMART rav1_2 67 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0471 HCH-Chr5:3190079 HCH9g0513 HCH-Chr9:3295237 1.70E-27 dispersed
HCH5g0471 HCH-Chr5:3190079 HCH5g0472 HCH-Chr5:3204823 1.20E-23 tandem
HCH11g1189 HCH-Chr11:44189533 HCH5g0471 HCH-Chr5:3190079 4.00E-51 wgd
HCH5g0471 HCH-Chr5:3190079 HCH5g0774 HCH-Chr5:5862230 3.90E-56 wgd
HCH5g0471 HCH-Chr5:3190079 HCH6g0933 HCH-Chr6:44141311 7.20E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33600 PF00847 AP2 4.20E-15 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0471 - - - 0.0