Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0472 | ATGGCTGACCAAAAATCTGCAATTAATGAGAGCCAAAAAGATCAACCTTCTGAGAGTACTATTTCTCCAATATTACAAGTCATTGACTCTTCTTCTGCTTCTTCTGATCGTCTTGTCCCCACAACTGTATTAGAGCCAAAATCTGAGGGTGAAAATTTTATTAAAAAAACACCCGTCAACGTCACCGTCACTGCCGCCACCTCCATGGCCTCCGGCAGCACCAAGAAGCACCCGTCGTACCGTGGTATACGGTGCCGGAGTGGGAAATGGGTGTCGGAGATCCGGGAGCCACGTAAGACTACACGCATATGGCTCGGCACATACCCGACGGCTGAAATGGCGGCTGCCGCTTACGATGTTGCTGCTCTAGCTCTCAGAGGTGGCGATGCAGTTCTAAACTTCCCCGGTTCTATCGGGATTTACCCGGTTCCGGCATCTTCCTTGCCGGTTGATATACGTAGGGCCGCCGCTGCGGCAGCCGCCAATGCGTTAAAGAAAGAGGAGTCCAGCGATGGCGATAAAGCCGGTACTGGTAGTAATCAAGATACTACGACAACGACAAACACAACAACGACGACGATAACAGATATCGGTTTTACGAATAAGTCTTGTTTAGGAGATGAGTTTTTGGATGAAGATGCAATTTTTGGGACACCTAGGTTTCTGGCTGACATGGCAGAGGGGATGATGGTGTCGCCGCCGAGAATGGACTCTCCGCCGTCCGATGATTCCATGGAGGATTCTGATGGAACAGAGAGTTTATGGAGCTACTTCTAA | 777 | 49.68 | MADQKSAINESQKDQPSESTISPILQVIDSSSASSDRLVPTTVLEPKSEGENFIKKTPVNVTVTAATSMASGSTKKHPSYRGIRCRSGKWVSEIREPRKTTRIWLGTYPTAEMAAAAYDVAALALRGGDAVLNFPGSIGIYPVPASSLPVDIRRAAAAAAANALKKEESSDGDKAGTGSNQDTTTTTNTTTTTITDIGFTNKSCLGDEFLDEDAIFGTPRFLADMAEGMMVSPPRMDSPPSDDSMEDSDGTESLWSYF | 258 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3204823 | 3205599 | - | evm.model.ptg000001l.472 | HCH5g0472 | 544624 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0472 | 258 | Gene3D | AP2/ERF domain | 79 | 136 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0472 | 258 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 42 | 257 | IPR045277 | GO:0003700(InterPro) | |
HCH5g0472 | 258 | SMART | rav1_2 | 79 | 143 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0472 | 258 | ProSiteProfiles | AP2/ERF domain profile. | 79 | 135 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0472 | 258 | FunFam | Ethylene-responsive transcription factor 2 | 78 | 136 | - | - | |
HCH5g0472 | 258 | CDD | AP2 | 78 | 135 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0472 | 258 | MobiDBLite | consensus disorder prediction | 164 | 191 | - | - | |
HCH5g0472 | 258 | MobiDBLite | consensus disorder prediction | 174 | 191 | - | - | |
HCH5g0472 | 258 | SUPERFAMILY | DNA-binding domain | 79 | 136 | IPR016177 | GO:0003677(InterPro) | |
HCH5g0472 | 258 | MobiDBLite | consensus disorder prediction | 230 | 258 | - | - | |
HCH5g0472 | 258 | Pfam | AP2 domain | 78 | 127 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0472 | 258 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g0472 | HCH-Chr5:3204823 | HCH6g0933 | HCH-Chr6:44141311 | 2.60E-43 | dispersed | |
HCH5g0471 | HCH-Chr5:3190079 | HCH5g0472 | HCH-Chr5:3204823 | 1.20E-23 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33601 | PF00847 | AP2 | 2.60E-11 | CL0081 | HCH | TF |
Pathway information
