Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0472 ATGGCTGACCAAAAATCTGCAATTAATGAGAGCCAAAAAGATCAACCTTCTGAGAGTACTATTTCTCCAATATTACAAGTCATTGACTCTTCTTCTGCTTCTTCTGATCGTCTTGTCCCCACAACTGTATTAGAGCCAAAATCTGAGGGTGAAAATTTTATTAAAAAAACACCCGTCAACGTCACCGTCACTGCCGCCACCTCCATGGCCTCCGGCAGCACCAAGAAGCACCCGTCGTACCGTGGTATACGGTGCCGGAGTGGGAAATGGGTGTCGGAGATCCGGGAGCCACGTAAGACTACACGCATATGGCTCGGCACATACCCGACGGCTGAAATGGCGGCTGCCGCTTACGATGTTGCTGCTCTAGCTCTCAGAGGTGGCGATGCAGTTCTAAACTTCCCCGGTTCTATCGGGATTTACCCGGTTCCGGCATCTTCCTTGCCGGTTGATATACGTAGGGCCGCCGCTGCGGCAGCCGCCAATGCGTTAAAGAAAGAGGAGTCCAGCGATGGCGATAAAGCCGGTACTGGTAGTAATCAAGATACTACGACAACGACAAACACAACAACGACGACGATAACAGATATCGGTTTTACGAATAAGTCTTGTTTAGGAGATGAGTTTTTGGATGAAGATGCAATTTTTGGGACACCTAGGTTTCTGGCTGACATGGCAGAGGGGATGATGGTGTCGCCGCCGAGAATGGACTCTCCGCCGTCCGATGATTCCATGGAGGATTCTGATGGAACAGAGAGTTTATGGAGCTACTTCTAA 777 49.68 MADQKSAINESQKDQPSESTISPILQVIDSSSASSDRLVPTTVLEPKSEGENFIKKTPVNVTVTAATSMASGSTKKHPSYRGIRCRSGKWVSEIREPRKTTRIWLGTYPTAEMAAAAYDVAALALRGGDAVLNFPGSIGIYPVPASSLPVDIRRAAAAAAANALKKEESSDGDKAGTGSNQDTTTTTNTTTTTITDIGFTNKSCLGDEFLDEDAIFGTPRFLADMAEGMMVSPPRMDSPPSDDSMEDSDGTESLWSYF 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3204823 3205599 - evm.model.ptg000001l.472 HCH5g0472 544624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0472 258 Gene3D AP2/ERF domain 79 136 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0472 258 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 42 257 IPR045277 GO:0003700(InterPro)
HCH5g0472 258 SMART rav1_2 79 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0472 258 ProSiteProfiles AP2/ERF domain profile. 79 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0472 258 FunFam Ethylene-responsive transcription factor 2 78 136 - -
HCH5g0472 258 CDD AP2 78 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0472 258 MobiDBLite consensus disorder prediction 164 191 - -
HCH5g0472 258 MobiDBLite consensus disorder prediction 174 191 - -
HCH5g0472 258 SUPERFAMILY DNA-binding domain 79 136 IPR016177 GO:0003677(InterPro)
HCH5g0472 258 MobiDBLite consensus disorder prediction 230 258 - -
HCH5g0472 258 Pfam AP2 domain 78 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0472 258 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0472 HCH-Chr5:3204823 HCH6g0933 HCH-Chr6:44141311 2.60E-43 dispersed
HCH5g0471 HCH-Chr5:3190079 HCH5g0472 HCH-Chr5:3204823 1.20E-23 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33601 PF00847 AP2 2.60E-11 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0472 - - - 0.0