Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0502 ATGTTGCCGCGGCGGAAACGCTTGCCAGCGGCGACGGAGGGGAATGCAGTGATAGAGAAGGATCAGTCGTCGGAATCGGAGACGAGAGCCAAGGCCAAGGCTGTGTTTAGAGTCAGCGGAATGAGTTGCTCTGCGTGCGCTGTTTCCGTGGAGAATTCCATCAAACAAATTCCGGGCATTCTTGACGCCGCCGTTGATTTCTTGAATGATAGAGCTCAAGTCTTCTTTCTCCCCACTGTCGTCGACGAAGAGACTATACTTAAGGCAATTGAAAATGTTGGATTTCAAGCTATGTTATCAAAGGATGTGACTGATCATCGATCAAGAGAAGTATGCCGGATTCGAGTAAACGGAATGGGCTGCACTTCTTGCTGTTCCATGGTCGAATCAGTCTTGAATGCAATCAATGGAGTTCAAAAGGCTCAAATTGCTGTATTGACAGAGGAAGCTGAAGCTCACTATGATCCAAAGATTGTTAGCTGCAGTCAACTTGTGAGAGCCTTACAAGATATTGGGTTTGAGGCCTTACTTATAACCACTGGTGAATGCATAAGCAAGATTGAGCTTAAACTTGATGGCATTGACAATGAAAATTCAGTAACAAAAGTTGAAGAATCACTCGAATCGGTCCCGGGAATCGAAGACGTAGATATAGATGTGACATTGAACAAAATCACCATCTCTTATAGGCCTGATATAACAGGACCAAGAACTTTCATTGAAGTCCTAGAGTCAATCAAATCTGAGCATTTCAAAGTAACAATATATCCTCAAGAAGGGGGAGGAGAAACTCATAGGCAGAAAGAAATTAAGCAGTATTACAGATACTTCTTGTGGAGTTCTGCTCTTACATTACCTGTATTCTTAACGTCCATGATCTTCATGTATATACCTGGGATTAAGCAGACACTTGATATCAAAGTAGTCAATATGATGACTGTTGGACAGATTATCCGGTGGGATCTGTCCACTCCGGTGCAATTCATCATAGGCTGGAGATTTTACGTTGGATCGTACAAAGCATTGCGCCACGGTTCTGCCAACATGGATGTGTTGATTACCTTGGGAACAAATGCAGCTTACTTTTATTCAGTCTACATATTGTTAAGATCAGCTACATCTCCTGGTTTTAGCGGTACTGATTTCTTCGAGACCAGTTCGATGCTAATTACATTTATTTTACTTGGTAAGTATTTGGAGGTTCTAGCCAAGGGAAAGACCTCTGAGGCCATTGCCAAGCTGAAGCACTTGGCTCCAGAGACGGCGACACTATTGACTCTAGACGGTCATGCAAATGTGGTAGGTGAAATTGAAATCAACAGTGAATTGATTCAAAGGAATGATGTGCTTAAGATCATACCAGGTGCCAAAGTAGCTTCTGATGGTGTTGTCGTATGGGGAGAGAGTCATGTCAATGAGAGTATGATCACAGGAGAAGCAAGGCCGGTAGGAAAAAGGACGGGTGATAAGGTGATCGGAGGAAGTGTGAATGAGAATGGCGTCTTGCATATAAAAGCCACACATGTTGGATCAGAAAGCTCTCTTGCTCAGATTGTTCGACTTGTCGAATCCTCCCAGATGGCGAAAGCTCCTGTCCAGAAATTTGCAGACCATATTTCTAAGTATTTTGTCCCCTTGGTGATTATGCTTTCTTTTTTCACTTGGCTTGCCTGGTTTATATCTGGAAAGTTGCATCTCTATCCAAAGTCCTGGATACCTTCTTCAATGGACAGTTTTGAGCTTGCTCTTCAATTTGGAATCTCTGTTATGGTCATAGCCTGCCCCTGTGCCCTTGGCCTAGCCACCCCGACCGCTGTTATGGTCGGTACTGGTGTGGGTGCATCTCAAGGTGTGCTAATCAAAGGTGGCCAAGCATTAGAATTTGCACATAAGGTGAATTGCATTGTGTTTGATAAGACCGGAACTCTAACTATTGGAAAGCCAGTGGTTGTGAGTATAAAACTTATGGAAACTACAGTACTTGAAGAACTTCTTGAACTCACTGCAGCAACTGAGGTGAACAGTGAGCACCCAGTTGCCAAGGCCATTGTTGAGTATGCCAAGACATTCAGGGAAGAAGAAGACCCCATTTGGCCAGAAGCTCAAGAATTCATATCTATTCCTGGTCATGGAGTAGAGGCCAAAGTAAGGAGCAAGGAAATAATGGTTGGAAACAAAAGCTTGATGATGAACAACAATATAGAAATCCCAAGGGAAGCAGAAAACTTTCTCATGGATGCAGAAAGTATGGCTCAAACTGGGGTTTTAGTGGCCATAGATAGGAAGGTAGCCGGAGTTTTCGTCGTGTCTGATCCATTAAAACCAGGTGCCAAAGAAATCATTTCCATTCTCAAATCTATGCAAGTGAAGAGTATCATGGTGACAGGAGACAACTGGGGTACTGCAAATTCCATTGCCAAAGAAGTTGGAATTGAAACAGTCATTGCTGAGGCTAAACCTGAGGAGAAAGCAGAGAAAGTGAAGAATCTGCAGGCAGCGGGACACACGGTGGCAATGGTGGGAGACGGCATCAATGACTCACCAGCCCTCGTAGCAGCAGACGTGGGAATGGCAATAGGAGCAGGCACAGACATTGCTATTGAGGCAGCAGACATTGTTCTAATGAAAAGTGACTTGCAAGATGTGATAACTGCCATTCATCTTTCCAGGAAAACATTTGCTAGAATTCGGCTGAATTACATCTGGGCATTGGGCTATAATCTTCTTGCCATTCCCATTGCAGCAGGAGTCCTTTTCCCCTCGACCCGATTCCGATTGCCGCCGTGGCTTGCTGGAGCTGCCATGGCAGCTTCTTCTGTTAGTGTGGTTTGCAGTTCTCTCCTGTTGAAGAAGTACAAGCGACCTAAGAAGCTGGATGAACTTCAGATTCAGATGAATGGTATAGTGGTTGAATAA 2916 44.2 MLPRRKRLPAATEGNAVIEKDQSSESETRAKAKAVFRVSGMSCSACAVSVENSIKQIPGILDAAVDFLNDRAQVFFLPTVVDEETILKAIENVGFQAMLSKDVTDHRSREVCRIRVNGMGCTSCCSMVESVLNAINGVQKAQIAVLTEEAEAHYDPKIVSCSQLVRALQDIGFEALLITTGECISKIELKLDGIDNENSVTKVEESLESVPGIEDVDIDVTLNKITISYRPDITGPRTFIEVLESIKSEHFKVTIYPQEGGGETHRQKEIKQYYRYFLWSSALTLPVFLTSMIFMYIPGIKQTLDIKVVNMMTVGQIIRWDLSTPVQFIIGWRFYVGSYKALRHGSANMDVLITLGTNAAYFYSVYILLRSATSPGFSGTDFFETSSMLITFILLGKYLEVLAKGKTSEAIAKLKHLAPETATLLTLDGHANVVGEIEINSELIQRNDVLKIIPGAKVASDGVVVWGESHVNESMITGEARPVGKRTGDKVIGGSVNENGVLHIKATHVGSESSLAQIVRLVESSQMAKAPVQKFADHISKYFVPLVIMLSFFTWLAWFISGKLHLYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALEFAHKVNCIVFDKTGTLTIGKPVVVSIKLMETTVLEELLELTAATEVNSEHPVAKAIVEYAKTFREEEDPIWPEAQEFISIPGHGVEAKVRSKEIMVGNKSLMMNNNIEIPREAENFLMDAESMAQTGVLVAIDRKVAGVFVVSDPLKPGAKEIISILKSMQVKSIMVTGDNWGTANSIAKEVGIETVIAEAKPEEKAEKVKNLQAAGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSDLQDVITAIHLSRKTFARIRLNYIWALGYNLLAIPIAAGVLFPSTRFRLPPWLAGAAMAASSVSVVCSSLLLKKYKRPKKLDELQIQMNGIVVE 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3416009 3422108 + evm.model.ptg000001l.502 HCH5g0502 544654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0502 971 CDD HMA 35 97 IPR006121 GO:0046872(InterPro)
HCH5g0502 971 FunFam Copper-transporting ATPase 1, putative 404 526 - -
HCH5g0502 971 SUPERFAMILY HMA, heavy metal-associated domain 32 99 IPR036163 GO:0046872(InterPro)
HCH5g0502 971 FunFam Probable copper-transporting ATPase HMA5 747 897 - -
HCH5g0502 971 Gene3D - 603 897 IPR023214 -
HCH5g0502 971 NCBIfam heavy metal translocating P-type ATPase 349 949 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
HCH5g0502 971 ProSitePatterns Heavy-metal-associated domain. 116 146 IPR017969 GO:0046872(InterPro)
HCH5g0502 971 Gene3D - 31 105 - -
HCH5g0502 971 CDD HMA 188 254 IPR006121 GO:0046872(InterPro)
HCH5g0502 971 SFLD p-type atpase 618 892 IPR044492 -
HCH5g0502 971 Gene3D - 643 720 IPR023299 GO:0000166(InterPro)
HCH5g0502 971 Gene3D - 721 771 IPR023299 GO:0000166(InterPro)
HCH5g0502 971 SUPERFAMILY Calcium ATPase, transmembrane domain M 381 919 IPR023298 -
HCH5g0502 971 Gene3D - 404 526 - -
HCH5g0502 971 SUPERFAMILY HAD-like 635 946 IPR036412 -
HCH5g0502 971 Gene3D - 186 255 - -
HCH5g0502 971 PRINTS Copper-transporting ATPase 1 signature 134 155 - -
HCH5g0502 971 PRINTS Copper-transporting ATPase 1 signature 33 58 - -
HCH5g0502 971 PRINTS Copper-transporting ATPase 1 signature 59 82 - -
HCH5g0502 971 PRINTS Copper-transporting ATPase 1 signature 88 108 - -
HCH5g0502 971 PRINTS P-type cation-transporting ATPase superfamily signature 840 859 - -
HCH5g0502 971 PRINTS P-type cation-transporting ATPase superfamily signature 863 875 - -
HCH5g0502 971 PRINTS P-type cation-transporting ATPase superfamily signature 636 650 - -
HCH5g0502 971 PRINTS P-type cation-transporting ATPase superfamily signature 787 797 - -
HCH5g0502 971 PRINTS P-type cation-transporting ATPase superfamily signature 472 486 - -
HCH5g0502 971 PRINTS P-type cation-transporting ATPase superfamily signature 765 776 - -
HCH5g0502 971 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 20 965 - -
HCH5g0502 971 FunFam ATPase copper transporting beta 106 180 - -
HCH5g0502 971 CDD HMA 114 175 IPR006121 GO:0046872(InterPro)
HCH5g0502 971 Gene3D - 108 177 - -
HCH5g0502 971 ProSiteProfiles Heavy-metal-associated domain profile. 185 251 IPR006121 GO:0046872(InterPro)
HCH5g0502 971 SFLD C1.7: P-type atpase like 618 892 - -
HCH5g0502 971 ProSitePatterns Heavy-metal-associated domain. 38 67 IPR017969 GO:0046872(InterPro)
HCH5g0502 971 Pfam haloacid dehalogenase-like hydrolase 633 854 - -
HCH5g0502 971 PRINTS Copper-transporting ATPase signature 334 353 - -
HCH5g0502 971 PRINTS Copper-transporting ATPase signature 406 424 - -
HCH5g0502 971 PRINTS Copper-transporting ATPase signature 874 888 - -
HCH5g0502 971 PRINTS Copper-transporting ATPase signature 817 834 - -
HCH5g0502 971 PRINTS Copper-transporting ATPase signature 545 559 - -
HCH5g0502 971 PRINTS Copper-transporting ATPase signature 913 927 - -
HCH5g0502 971 PRINTS Copper-transporting ATPase signature 386 405 - -
HCH5g0502 971 FunFam Copper-transporting ATPase HMA5 31 102 - -
HCH5g0502 971 ProSiteProfiles Heavy-metal-associated domain profile. 32 98 IPR006121 GO:0046872(InterPro)
HCH5g0502 971 CDD P-type_ATPase_Cu-like 275 936 - -
HCH5g0502 971 Pfam Heavy-metal-associated domain 35 95 IPR006121 GO:0046872(InterPro)
HCH5g0502 971 Pfam Heavy-metal-associated domain 114 174 IPR006121 GO:0046872(InterPro)
HCH5g0502 971 Pfam Heavy-metal-associated domain 189 247 IPR006121 GO:0046872(InterPro)
HCH5g0502 971 NCBIfam HAD-IC family P-type ATPase 389 922 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH5g0502 971 ProSitePatterns E1-E2 ATPases phosphorylation site. 638 644 IPR018303 -
HCH5g0502 971 Pfam E1-E2 ATPase 417 614 - -
HCH5g0502 971 SUPERFAMILY HMA, heavy metal-associated domain 185 249 IPR036163 GO:0046872(InterPro)
HCH5g0502 971 SUPERFAMILY Calcium ATPase, transduction domain A 436 522 IPR008250 -
HCH5g0502 971 SUPERFAMILY HMA, heavy metal-associated domain 110 181 IPR036163 GO:0046872(InterPro)
HCH5g0502 971 MobiDBLite consensus disorder prediction 1 24 - -
HCH5g0502 971 ProSiteProfiles Heavy-metal-associated domain profile. 110 176 IPR006121 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0502 HCH-Chr5:3416009 HCH9g0913 HCH-Chr9:6734602 0.00E+00 dispersed
HCH5g0502 HCH-Chr5:3416009 HCH8g1049 HCH-Chr8:46443646 3.30E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0502 K17686 - csv:101220448 1545.79