Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g0505 | ATGGATGGGAGGGAAGGCATGGCATTGTCTGGTGGATCAGCTCCTTATTATATACATAGGGGAGGGGTTGGAGGGTCTGGATCAGGATCACCAATGGCAGGATCACATGCCTCCCCTATATTTAGGCCCATGGCCAACCAGGGAGTTTTTGGTCACTCAAATCTTAGAGGTGGCTCAGTTGGATCCACATATACAATAGAGCCTTCACATTCGAATTATATCGGCGGTATAAGTGTTAATGTGCCAACTAACTCTAGTGAACCTGTAAAGAAGAAAAGGGGAAGGCCCCGGAAATATGCTCCGGATGGGCAAGTCTCATTGGGGTTGTCTCCTATGTCTACTGGTTCAAAATCCACTCCAGCTTCGAATTCATCAACCCCTAGTCGACGTAGAGGACGACCGCCTGGTTCTGGAAGAAAACAACAATTAGCCCTGCTCGGTGATTGGATGAACAGTTCAGCTGGACTAGCTTTTGCCCCACATGTCATTCACGTTGGAGCTGGAGAAGACATTGTAGCAAAAATATTGTCATTTTCCCAGCAAAGGCCAAGGGCAGTTTGTGTCTTGTCAGGCAATGGTACCGTCTCTTCTATTACACTACGTCAGCCTGCATCTACTGGCGTGAGCGTCACATATGAGGGTCATTTCTCGATATTGTGCTTGTCTGGTTCTTACTTGGTTGCTGAAGATGGCAGTCCTAAAAATAGGACAGGCGGAGTTAGTGTCTCCCTCTCTAGTCCTGATGGTCATGTCATTGGTGGTGGTGTTGCTGTGCTTATAGCAGCTGGCCCGGTTCAGGTAGTAGTATGTAGTTTTGTTTATGGTGCAAAGATCAAGAACAAGCAAGTTACTGGTCCTAGAAGCAATGAAGAGTCCGAAAACGAGCACCATGATAATTTAGTTTCACCGACAGGTGCCCCATCCACTCAAACCTACACTCCGTCTACAATAGGTATTTGGCCTGGTTCCCGCTCAATCGATGTGAGAAACCCCCATACCGGAATCGACTTGACGCGGGGATAA | 1023 | 47.61 | MDGREGMALSGGSAPYYIHRGGVGGSGSGSPMAGSHASPIFRPMANQGVFGHSNLRGGSVGSTYTIEPSHSNYIGGISVNVPTNSSEPVKKKRGRPRKYAPDGQVSLGLSPMSTGSKSTPASNSSTPSRRRGRPPGSGRKQQLALLGDWMNSSAGLAFAPHVIHVGAGEDIVAKILSFSQQRPRAVCVLSGNGTVSSITLRQPASTGVSVTYEGHFSILCLSGSYLVAEDGSPKNRTGGVSVSLSSPDGHVIGGGVAVLIAAGPVQVVVCSFVYGAKIKNKQVTGPRSNEESENEHHDNLVSPTGAPSTQTYTPSTIGIWPGSRSIDVRNPHTGIDLTRG | 340 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3435777 | 3440104 | - | evm.model.ptg000001l.505 | HCH5g0505 | 544657 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g0505 | 340 | CDD | DUF296 | 160 | 272 | IPR005175 | - | |
| HCH5g0505 | 340 | Gene3D | - | 160 | 289 | - | - | |
| HCH5g0505 | 340 | ProSiteProfiles | PPC domain profile profile. | 152 | 296 | IPR005175 | - | |
| HCH5g0505 | 340 | MobiDBLite | consensus disorder prediction | 282 | 340 | - | - | |
| HCH5g0505 | 340 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 158 | 274 | - | - | |
| HCH5g0505 | 340 | MobiDBLite | consensus disorder prediction | 284 | 298 | - | - | |
| HCH5g0505 | 340 | MobiDBLite | consensus disorder prediction | 107 | 131 | - | - | |
| HCH5g0505 | 340 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 76 | 306 | IPR039605 | GO:0003680(InterPro) | |
| HCH5g0505 | 340 | MobiDBLite | consensus disorder prediction | 299 | 320 | - | - | |
| HCH5g0505 | 340 | MobiDBLite | consensus disorder prediction | 75 | 140 | - | - | |
| HCH5g0505 | 340 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 160 | 272 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH5g0505 | HCH-Chr5:3435777 | HCH7g1547 | HCH-Chr7:47928116 | 1.00E-50 | dispersed | |
| HCH13g1146 | HCH-Chr13:37627919 | HCH5g0505 | HCH-Chr5:3435777 | 6.70E-71 | wgd |
Pathway information