Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0521 ATGGAGGGTAAGGAAGAGGATGTGAAGTTAGGAGCAAACAAGTACTCAGAGAGACAGCCGATTGGAACATCAGCTCAGACGGACAAGGACTACAAAGAGCCGCCGCCGGCTCCATTGTTCGAGCCCGGGGAGCTGACGTCTTGGTCGTTTTACAGAGCCGGAATCGCTGAGTTCGTGGCAACTTTCTTGTTCCTTTATATCACCATTTTGACTGTCATGGGCGTCAGCAGAGCCCCTTCTAAATGCTCCACTGTTGGCATTCAAGGCATTGCTTGGGCTTTCGGCGGCATGATCTTTGCCCTTGTTTATTGCACCGCCGGCATCTCTGGTGGGCATATAAACCCAGCAGTGACGTTTGGACTATTCCTGGCGAGGAAGCTGTCTCTAACGAGAGCTGTGTTCTACATTATCATGCAATGTCTCGGAGCCATTTGCGGCGCGGGTGTTGTGAAGGGCTTTGAGAAGTCCATCTACGAGCAGAAGATGGGCGGCGCTAACGTTGTCGCTCACGGCTACACCAAGGGCGACGGCCTCGGCGCTGAGATTATTGGTACCTTTGTTCTTGTTTATACTGTTTTCTCTGCCACTGATGCCAAGAGAAACGCCAGAGACTCTCATGTCCCTATTTTGGCTCCTCTCCCCATCGGTTTCGCAGTGTTTTTGGTTCATTTGGCCACAATCCCCATCACTGGAACTGGTATCAACCCTGCAAGGAGCCTTGGAGCTGCAATCATCTACAACAAACAGCATGCTTGGGATGATCATTGGATTTTCTGGGTGGGACCCTTCATTGGAGCTGCTCTTGCTGCTATTTACCACCAGATCATCATCAGAGCTATTCCTTTCAAGTCCAGGGCTTGA 861 50.99 MEGKEEDVKLGANKYSERQPIGTSAQTDKDYKEPPPAPLFEPGELTSWSFYRAGIAEFVATFLFLYITILTVMGVSRAPSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGFEKSIYEQKMGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKQHAWDDHWIFWVGPFIGAALAAIYHQIIIRAIPFKSRA 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3561664 3563645 + evm.model.ptg000001l.521 HCH5g0521 544673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0521 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 284 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
HCH5g0521 286 Pfam Major intrinsic protein 44 273 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0521 286 NCBIfam MIP family channel protein 56 272 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0521 286 FunFam Probable aquaporin PIP1-2 37 286 - -
HCH5g0521 286 CDD MIP 52 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0521 286 Gene3D Glycerol uptake facilitator protein. 37 284 IPR023271 -
HCH5g0521 286 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0521 286 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0521 286 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0521 286 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0521 286 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0521 286 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0521 286 MobiDBLite consensus disorder prediction 1 35 - -
HCH5g0521 286 ProSitePatterns MIP family signature. 112 120 IPR022357 -
HCH5g0521 286 SUPERFAMILY Aquaporin-like 44 278 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0391 HCH-Chr1:51794234 HCH5g0521 HCH-Chr5:3561664 7.60E-140 dispersed
HCH1g0392 HCH-Chr1:51802537 HCH5g0521 HCH-Chr5:3561664 2.00E-140 dispersed
HCH2g0514 HCH-Chr2:48862870 HCH5g0521 HCH-Chr5:3561664 8.00E-18 dispersed
HCH5g0521 HCH-Chr5:3561664 HCH9g0588 HCH-Chr9:3961959 1.20E-108 dispersed
HCH5g0521 HCH-Chr5:3561664 HCH2g1176 HCH-Chr2:54284098 3.20E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0521 K09872 - csv:101217440 543.117