Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g0530 | ATGGGCTTCCCTGCAAGCTACACAGAGCTTCTTCTTCCAAAGCTCTTCATCCACGCTTTAACCTTTCTGGGTTTTCTCAGAAAATTCATTTCCTCCCTTTTCCGTCTTCTGGGTCTTCAAGATTTCCTCGAACCAGACATTTCTTGGCCTCACCATAACGATAATTTCCCCCCTCCTCATTTCCCGGAACTCGATCCCGTCTCCGCCGCCATACTCCGTGAGATTCTTCCCGTCGTTAAATTTTCCGACCTCCAAGACCCGCCGGAGAGTTGCGCCGTTTGTCTCCTCGAGTTCGAAGCCGACGACGAGATCCGGCACCTGGTAAACTGCCGCCACATATTCCACCGGGGGTGTCTTGATCGGTGGATGGGTTATGGGCAGAGGACGTGTCCTCTTTGCCGGACGGTTTTTATTCCGGCTGATTTCCGGTGTGGTTCCGATGAGAGATTTTGGGATGATGAATCTGAAATATCTGAACTTCAGGGTGATTCTTCTTCGCTACTTACCGCTGCTGCTTTGTAG | 522 | 50.96 | MGFPASYTELLLPKLFIHALTFLGFLRKFISSLFRLLGLQDFLEPDISWPHHNDNFPPPHFPELDPVSAAILREILPVVKFSDLQDPPESCAVCLLEFEADDEIRHLVNCRHIFHRGCLDRWMGYGQRTCPLCRTVFIPADFRCGSDERFWDDESEISELQGDSSSLLTAAAL | 173 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3634251 | 3634772 | - | evm.model.ptg000001l.530 | HCH5g0530 | 544682 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g0530 | 173 | Pfam | Ring finger domain | 90 | 134 | IPR001841 | - | |
| HCH5g0530 | 173 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 134 | IPR001841 | - | |
| HCH5g0530 | 173 | SUPERFAMILY | RING/U-box | 74 | 140 | - | - | |
| HCH5g0530 | 173 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 137 | IPR013083 | - | |
| HCH5g0530 | 173 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 7 | 140 | - | - | |
| HCH5g0530 | 173 | SMART | ring_2 | 91 | 133 | IPR001841 | - | |
| HCH5g0530 | 173 | SMART | ringv_2 | 90 | 134 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g1115 | HCH-Chr13:36716294 | HCH5g0530 | HCH-Chr5:3634251 | 5.90E-44 | wgd | |
| HCH5g0530 | HCH-Chr5:3634251 | HCH7g1638 | HCH-Chr7:48529044 | 1.20E-31 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH5g0530 | K16281 | - | csv:101215533 | 262.307 |