Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0533 ATGGCGCGAGAGCTTTGTGAAGAAGAAGATAAGTCAAATGAAATGGTCACAACAGCGGGAGCTGGTTTTTTCTACTCTGACAATTCAAATCTTCAGTCTCATTTCTCCAATCAAATGATTCCAAATGGTTTTGGATCCACCCCAGTTGAGATTTTTAATCTAACAACTGGCATCGAAAACATGATGGGTTTCTCGAAAAGTCACCACCACCACCATCACCAACACCAACACGATCCCCACCGTCATCGAGACGAGGCAAGTTCCTCGTCTTTGAAGGCGGTGGTGACCGAGTCAACTAACCCTTTTTACCACAAGATGGCTGAATTCACGACGGCGAGTGACGCTTGGCCGCCGCCGCCCCAAGAGAATAGATTCGAGTTAGTTGATGATTCTTCATTAAGATGTGTGTTTCCATGTGAAGGAAATGAGAGACCAAGTCAAGGACTCTCTCTTTCTCTCTCTTCTTCCAATCCTTCTTCTATTGGATTACAGTCTTTTGAACTTAGACAACAAACAAATCATCAACATCAGATTTTGCAACAACAAGATGAAGAAGAAGAAGGAGGAGGAGGAGGAGAAGATGGTTTTTTGGGAAAATTATCAGCAAATTTACATCAACAAACAACAACAGCAACAGCTCAGTTTTTTCAGCTTAGAAACTCAAGGTTTTTGGTTCCAGCTCAAGAGCTTCTTTATGAATTTTGTAGCCTTGGAATCATGAACAAGAATCAGAATGATTCTTCTAATTCTTCACCAAAGCAGCAGAAGAAGAAGATGATCATGGGGAGTAATAGTTATAATAATAACAACAGCACTGGTAGTTCTTCAAGGAAAGAATCTCTTCAGTCTCTTGATTTCTTGGAGTTACAAAAGAGAAAAACTAAGCTCTTTTCAATGCTAGAAGAGCTAGAGAGAAGATACAGGCATTACTGCCAGCAAATGAAGGCGGTAGTGTCCTCGTTTGAAGAGGTGGCTGGAAGCGGAGCGGCGACCGTGTACTCTGCGTTGGCGTCGAAGGCGATGTCGAGGCATTTCCGGTGCCTGAAAGATGGAATAGTAAGTCAAATTCAGGCGACAAAAATTGCCATGGGAGAAAAAGATCCAGTTGCACCAGGCACCACTAGAGGAGAAACACCAAGGCTTAGAGTCATTGATCAAGCTATCAGACAACATAGAGCTTTCCAGCAAATAAGCTTAATGGAAAGTCATCCATGGCGGCCTCAACGTGGCCTTCCTGAACGTTCTGTTTCTGTTCTTCGAGCTTGGCTTTTCGAGCATTTTCTTCACCCGTATCCAAGCGATGTTGATAAACATATCTTAGCCCGCCAAACAGGCCTTTCCAGAAGTCAGGTATCAAATTGGTTCATTAATGCGAGGGTGAGGCTGTGGAAGCCAATGGTGGAAGAAATGTATGTAGAAGAAACAAAGGAAGGAGAGGAAGATTACAATAACTACAACAACAATGTCACCTCTTCCGATGGACTGCCTGATTTGGATGACATAAACGTAAGGATGGGTCAAAATCGTCGGCTTCAAACCCGAATCGAAGATCAAAAACCAACACCAGATCAACTTCTCAGAATAGACTCAGAATGTCTCTCTTCCATTATCACCAACTCGGAGAAAAACGACTTGAGATCAACCAAAACCATGCAAAACAACCACCACCATGCCCACAATCAGGGCTTCGGGCGGGTCAATACCGAGACGTTCGGGACGGTGGAGCTGGACTTCTCGTCGTACAACCACCACTCGAACGGCGGGGTTTCATACCCTAACAACTCAGCCAGTGAGGTCAACAACAGCCAGCATTTCGGTGTTGCCGGGGGCGTGTCGTTGACGTTAGGGTTACAGCAGCATGCAGGTGGGAATGGGGTGAGCATTGCCTTCTCCCCAGGGTCACAAAGCTCTCTCTTCTACACAAGAGACCAAATGGAAGAATGTCAACCAGTTTCATATTCACTTTTAGAAGGAGAACCACAGAATCTTCCTTACAGAAACTTGATGGGTGCACAGCTGCTCCATGACTTGGCAGGATAG 2040 44.75 MARELCEEEDKSNEMVTTAGAGFFYSDNSNLQSHFSNQMIPNGFGSTPVEIFNLTTGIENMMGFSKSHHHHHHQHQHDPHRHRDEASSSSLKAVVTESTNPFYHKMAEFTTASDAWPPPPQENRFELVDDSSLRCVFPCEGNERPSQGLSLSLSSSNPSSIGLQSFELRQQTNHQHQILQQQDEEEEGGGGGEDGFLGKLSANLHQQTTTATAQFFQLRNSRFLVPAQELLYEFCSLGIMNKNQNDSSNSSPKQQKKKMIMGSNSYNNNNSTGSSSRKESLQSLDFLELQKRKTKLFSMLEELERRYRHYCQQMKAVVSSFEEVAGSGAATVYSALASKAMSRHFRCLKDGIVSQIQATKIAMGEKDPVAPGTTRGETPRLRVIDQAIRQHRAFQQISLMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYVEETKEGEEDYNNYNNNVTSSDGLPDLDDINVRMGQNRRLQTRIEDQKPTPDQLLRIDSECLSSIITNSEKNDLRSTKTMQNNHHHAHNQGFGRVNTETFGTVELDFSSYNHHSNGGVSYPNNSASEVNNSQHFGVAGGVSLTLGLQQHAGGNGVSIAFSPGSQSSLFYTRDQMEECQPVSYSLLEGEPQNLPYRNLMGAQLLHDLAG 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3672278 3676091 + evm.model.ptg000001l.533 HCH5g0533 544685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0533 679 FunFam BEL1-like homeodomain protein 4 408 470 - -
HCH5g0533 679 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 157 493 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH5g0533 679 MobiDBLite consensus disorder prediction 66 89 - -
HCH5g0533 679 SMART prehox3 212 354 IPR006563 -
HCH5g0533 679 Gene3D - 408 470 - -
HCH5g0533 679 ProSiteProfiles 'Homeobox' domain profile. 402 465 IPR001356 GO:0003677(InterPro)
HCH5g0533 679 MobiDBLite consensus disorder prediction 243 279 - -
HCH5g0533 679 SUPERFAMILY Homeodomain-like 406 472 IPR009057 -
HCH5g0533 679 SMART HOX_1 405 469 IPR001356 GO:0003677(InterPro)
HCH5g0533 679 Pfam Homeobox KN domain 422 461 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH5g0533 679 CDD homeodomain 405 466 IPR001356 GO:0003677(InterPro)
HCH5g0533 679 Coils Coil 286 306 - -
HCH5g0533 679 Pfam Associated with HOX 218 352 IPR006563 -
HCH5g0533 679 MobiDBLite consensus disorder prediction 171 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0120 HCH-Chr2:7860613 HCH5g0533 HCH-Chr5:3672278 1.90E-78 dispersed
HCH3g1226 HCH-Chr3:45566935 HCH5g0533 HCH-Chr5:3672278 1.10E-52 dispersed
HCH4g0543 HCH-Chr4:3530333 HCH5g0533 HCH-Chr5:3672278 1.70E-34 dispersed
HCH4g1319 HCH-Chr4:9296258 HCH5g0533 HCH-Chr5:3672278 2.30E-57 dispersed
HCH5g0533 HCH-Chr5:3672278 HCH9g0718 HCH-Chr9:4783199 3.00E-46 dispersed
HCH5g0533 HCH-Chr5:3672278 HCH11g0479 HCH-Chr11:5458923 4.90E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33605 PF07526 POX 1.80E-45 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0533 - - - 0.0