Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g0538 | ATGGCTACCGAGATCTCGTCCGTCACGAGTGCTATAACATTCCATTTCCGGCCAAAATTCTCTCATAATCCAAAACCCATCTCAGATAGAACCCCACTTCTTCTTTTCACTCGTCCAAACCCTCTCCAGAGGCAATCTTCAAAGGGTAAAAGAGAGATTTTAATCACCGAAGTTGAAACAGATCATGATCCAATTTTAATAAATCCAAGCCCCACAGAGACGAAAATAGCCAAAAAGAAATCAGCAAGAAACACTTATCTCATAGCTGCAATCATTTCCAGTTTTGGAATCACTTCCATGGCTGCCATAGCCGTTTTCTATCGTTTTTCCTGGAAAATGGAGGGCGGCGCAGAGTTTCCAGTTTTGGAGATGCTTGGCACCTTGGCTCTTTCAGTGGGTGCTGCAGTGGGAATGGAATTCTGGGGAAGATGGGCACATAAAGAACTATGGCATGCGTCACTATGGAATATGCATGAGTCTCATCACAGGCCGAGGGATGGAGCATTTGAAATGAATGATGTATTTGCGATTATGAATGCAGTGCCCGCCATTTCTCTTCTTTCATTTGGATTCTTCAACGATGGCCTCTTTCCAGGCCTCTGTTTCGGTGCCGGTTTGGGAATAACGGTATTTGGGATTGCCTACATGTTCGTGCATGATGGCCTCGTACACCGTCGATTCCCGGTGGGGCCCATAGCTGACGTCCCTTACTTACGACGTGTCGCTGCTGCTCATCATCTTCATCATACGGACAAATTCAAGGGAGTGCCGTACGGATTGTTTCTTGGACCCAAGGAATTGGAAAAAGTGGGCGGCGACGAGGTGTTGGGAAAGGAAATCCAAAGAAGAACAAAAGTCTCCAAACATTGA | 870 | 46.09 | MATEISSVTSAITFHFRPKFSHNPKPISDRTPLLLFTRPNPLQRQSSKGKREILITEVETDHDPILINPSPTETKIAKKKSARNTYLIAAIISSFGITSMAAIAVFYRFSWKMEGGAEFPVLEMLGTLALSVGAAVGMEFWGRWAHKELWHASLWNMHESHHRPRDGAFEMNDVFAIMNAVPAISLLSFGFFNDGLFPGLCFGAGLGITVFGIAYMFVHDGLVHRRFPVGPIADVPYLRRVAAAHHLHHTDKFKGVPYGLFLGPKELEKVGGDEVLGKEIQRRTKVSKH | 289 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3697151 | 3698876 | - | evm.model.ptg000001l.538 | HCH5g0538 | 544690 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g0538 | 289 | PANTHER | BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC | 56 | 288 | IPR045019 | GO:0009507(PANTHER)|GO:0010291(PANTHER)|GO:0016119(PANTHER)|GO:0016123(PANTHER)|GO:0016491(InterPro) | |
| HCH5g0538 | 289 | Pfam | Fatty acid hydroxylase | 134 | 262 | IPR006694 | GO:0005506(InterPro)|GO:0008610(InterPro)|GO:0016491(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g1252 | HCH-Chr11:44678204 | HCH5g0538 | HCH-Chr5:3697151 | 4.30E-101 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH5g0538 | K15746 | - | mtr:11424160 | 362.844 |