Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0539 ATGGCTACTAAAGAATCAAGTTCCACTACTGCCACTGAAGGGAAGATTAAAGGAGCTCTCACTCATGGCGGTCGTTATGTGCAGTACAATGTGTACGGTAATTTGTTTGAGGTTTCAGCTAAGTATGTTCCTCCGATTCGACCGATTGGACGAGGTGCTTATGGTCTTGTCTGCGCTGCTGTAAACTCAGACACACATGAGGAGGTTGCCATCAAGAAAATTGGTAATGCATTTGACAATATAATTGATGCCAAAAGGACATTGAGAGAAATTAAGCTTCTTTGCCACATGGAACATGAGAATATTATTGCCATCAGAGACATCATACGACCCCCAAAAAAGGAGGTTTTCAATGATGTGTATATTGTTTATGAATTGATGGACACTGATCTTCATCAAATAATTCGTTCTGACCAAACTTTGACAGACGATCATTGCCAGTACTTTTTGTATCAGCTAATGCGTGGGCTGAAATATGTGCACTCAGCCAAGGTCTTGCACCGTGATCTCAAGCCCAGCAACCTGCTTCTGAATTCAAATTGTGACCTTAAAATTGGAGACTTTGGATTGGCAAGGACAACTTCTGAAACTGACTTCATGACTGAATATGTGGTTACTCGCTGGTACAGAGCACCGGAATTGCTCCTTAATTGTTCAGAGTACACTGCTGCTATTGATGTTTGGTCCGTTGGATGCATACTTGGTGAGATAATGACCAGAGAACCTCTGTTCCCTGGAAAAGATTATGTTCATCAACTCAGACTTATAACTGAGCTACTAGGTTCACCAGATGATGCTAGCCTAGGATTTCTTCGAAGTGATAATGCCCGACGATATGTTAAGCAGCTTCCACAGTACAGGAAACAACAATTTTCAACTAGATTTCCAAATATGTCTCCTACAGCCCTGGATCTTCTGGAAAAGATGCTTGTATTTGATCCCAACAAACGCATTACAGTAGAGGAGGCACTCTGTCACCCATACTTGCAATCTCTTCATGACATCAACGATGAGCCGGTCTGTTCTAGACCTTTCAATTTTGATTTCGAGCAACCATCATGCACTGAAGAGCATATTAAAGAACTCATCTGGAAAGAATCCGTCAGGTTCAATCCTGATGAATCAGCCAGGAGGACGACACTCTGCGTGTGA 1152 42.19 MATKESSSTTATEGKIKGALTHGGRYVQYNVYGNLFEVSAKYVPPIRPIGRGAYGLVCAAVNSDTHEEVAIKKIGNAFDNIIDAKRTLREIKLLCHMEHENIIAIRDIIRPPKKEVFNDVYIVYELMDTDLHQIIRSDQTLTDDHCQYFLYQLMRGLKYVHSAKVLHRDLKPSNLLLNSNCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYRKQQFSTRFPNMSPTALDLLEKMLVFDPNKRITVEEALCHPYLQSLHDINDEPVCSRPFNFDFEQPSCTEEHIKELIWKESVRFNPDESARRTTLCV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3699647 3703355 - evm.model.ptg000001l.539 HCH5g0539 544691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0539 383 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 36 365 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
HCH5g0539 383 ProSitePatterns MAP kinase signature. 78 181 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0539 383 Gene3D Phosphorylase Kinase; domain 1 26 366 - -
HCH5g0539 383 FunFam Mitogen-activated protein kinase 127 356 - -
HCH5g0539 383 CDD STKc_TEY_MAPK 36 372 - -
HCH5g0539 383 Gene3D Transferase(Phosphotransferase) domain 1 127 356 - -
HCH5g0539 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g0539 383 ProSiteProfiles Protein kinase domain profile. 43 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0539 383 SMART serkin_6 43 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0539 383 ProSitePatterns Protein kinases ATP-binding region signature. 49 73 IPR017441 GO:0005524(InterPro)
HCH5g0539 383 SUPERFAMILY Protein kinase-like (PK-like) 46 337 IPR011009 -
HCH5g0539 383 Pfam Protein kinase domain 47 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0539 383 FunFam Mitogen-activated protein kinase 28 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1283 HCH-Chr3:48738991 HCH5g0539 HCH-Chr5:3699647 4.70E-147 dispersed
HCH4g0122 HCH-Chr4:668730 HCH5g0539 HCH-Chr5:3699647 7.30E-162 dispersed
HCH4g0746 HCH-Chr4:4811736 HCH5g0539 HCH-Chr5:3699647 4.00E-112 dispersed
HCH5g0539 HCH-Chr5:3699647 HCH6g1629 HCH-Chr6:49363903 2.60E-95 dispersed
HCH9g1407 HCH-Chr9:46468642 HCH5g0539 HCH-Chr5:3699647 2.70E-45 dispersed
HCH13g1112 HCH-Chr13:36576240 HCH5g0539 HCH-Chr5:3699647 1.90E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81504 PF00069 Pkinase 2.70E-71 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0539 K20600 - csv:101214254 762.681