Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0563 ATGGAAGCACTGTGGATTTTATGTTTTGTTTTCTTATTGGGGTTTGTTTATTTGCCTATTAATGCCGACCCAATTGAAGATAAGAGAGCTTTGCTTGATTTTGTTAACAATCTTCCCCATTCTCGGTCTCTCAATTGGAATGCGGCTTTTCCAGTTTGTGGTTTCTGGACTGGTATTACTTGCAGTGAGGATAAGTCTCGTGTTATCGCGGTCCGGTTGCCGGGAGTCGGGTTCCACGGTCCGATTCCGACTGATACATTAAGCCGTCTTTCGGCTCTAGAAATATTGAGTCTCAGATCCAATCGTATAACTGGGGGCTTCCCTTCTGATTTTTCAAATCTGAGTAACTTGTCTTATCTTTATCTTCAGTTCAATGACTTCTCTGGGCCATTGCCTTCCAATTTCTCCGTTTGGAGGAACCTTACTTTTGTGAATCTGTCTAACAATGGATTCAATGGTAGCATTCCTTATTCACTTTCTAATCTGAGAGAGCTTACTGGTTTGAATCTTGCAAACAACTCACTTTCAGGAGCAATTCCTGAACTTCTAGTGCCTCAATTACACATTCTGAACTTATCTAACAATAATTTGACTGGGAGTGTGCCTAAATCCTTGCAAAGATTTCCAAGGTCTGTGTTTGTGGGAAATGAGATATCTTTTGAAAGTTTACAGCCAAACAATTCTCTCGTGCCGCCTCCATTGTCGGTGTCGAATACAAAGCCTAAGAATGGTGGGAGGCTTGGGGAAGCAGCATTATTAGGAATTATAATTGCTGGTGGTGTTTTGGGACTTTTAGCGTTTGGTTTTCTGATACTTGTTTGCTTCTCAAGAAGAAAGAGGGAAGATGAGTATTCTGGGAACTTGCAGAAAGGAGGAATGTCGCCGGAGAAAGTGATTTCGAGGACTCAAGATGCAAATAACAGATTGGTTTTCTTTGAAGGGTGTAATTATGCTTTTGATTTGGAGGATTTGTTAAGGGCTTCTGCTGAGGTCTTGGGTAAGGGGACTTTTGGTACTGCATATAAAGCCATTCTGGAGGATGCGACGATGGTTGTTGTTAAGAGGCTAAAGGATGTAAGTGCCGGGAAACGCGATTTCGAGCAGCAAATGGAGATTGTGGGCAGTATTAGGCATGAGAATGTGGCTGAGTTGAAGGCATACTATTATTCCAAAGATGAGAAGCTGATGGTTTATGATTTCTATGCTCAGGGAAGTGTCTCGGCTATGTTGCACGGTAAACGAGGAGAGGATAAAACCCCCTTAGACTGGGATTCAAGACTGAGAATAGCACTTGGTGCAGCGCGAGGGATAGCCCGTGTCCATGCCGAAAGTGGAGGGAAGCACGTCCATGGAAATGTGAAATCCTCAAACATCTTTTTGAACTCTCAACAGTACGGATGTGTGTCTGATCTCGGTCTAGCAACCATAACGAGCTCACTCGCTCCGCCTATATCTCGTGCGGCTGGTTACCGAGCTCCAGAAGTGACAGACACCCGTAAGGCAACCCAATCTTCCGACGTTTTCAGCTTCGGCGTGGTGCTACTGGAGCTTCTAACAGCAAAGTCTCCCATACATGCCACTGGTGGTGAAGAGATTGTCCACCTAGTGAGATGGGTTCACTCAGTCGTCCGAGAGGAGTGGACGGCTGAAGTATTCGATGTCGAGCTAATGAGATATCCCAATATAGAAGAAGAAATGGTCGAGATGTTACAGATAGCCTTGTCATGTGTGGCCAGGATACCAGACCAAAGACCGAAAATGGTGGAAGTAGTGAAGATGATAGAGAATGTCCGACCAATGGAAGCCGAGAATCGACCTTCTTCCACGAATAGTACGACGCAGCAAGCTGTTGGGGTAGAAAACTCAACCTCCCAGCAAAAGAACAAACACGCAGGAGGAGGATCTCAAGAGATTGAACTCTTTTTAGATTTAGCGATGGCATCGAAGCGGATCTTGAAAGAGCTCAAGGATCTCCAGAAAGATCCTCCTACGTCTTGCAGTGCAGGCCCAGTAGCTGAAGATATGTTCCATTGGCAAGCAACAATTATGGGTCCTCCTGACAGTCCATATGCAGGCGGAGTGTTTCTTGTCAACATTCATTTCCCTCCAGATTATCCATTTAAACCACCCAAGGTTGCTTTCAGAACAAAGGTCTTCCATCCCAATATCAACAGCAACGGTAGCATATGCCTTGACATACTTAAGGAGCAATGGAGTCCTGCACTGACTATTTCTAAGGTGTTACTTTCGATCTGTTCACTGCTAACAGATCCGAATCCTGATGACCCTTTGGTACCGGAGATTGCGCACATGTACAAGACTGACAGAAGCAAGTACGAGGCGACCGCCAGAAGCTGGACCCAGAAGTATGCAATGGGTTAG 2382 45.05 MEALWILCFVFLLGFVYLPINADPIEDKRALLDFVNNLPHSRSLNWNAAFPVCGFWTGITCSEDKSRVIAVRLPGVGFHGPIPTDTLSRLSALEILSLRSNRITGGFPSDFSNLSNLSYLYLQFNDFSGPLPSNFSVWRNLTFVNLSNNGFNGSIPYSLSNLRELTGLNLANNSLSGAIPELLVPQLHILNLSNNNLTGSVPKSLQRFPRSVFVGNEISFESLQPNNSLVPPPLSVSNTKPKNGGRLGEAALLGIIIAGGVLGLLAFGFLILVCFSRRKREDEYSGNLQKGGMSPEKVISRTQDANNRLVFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATMVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVAELKAYYYSKDEKLMVYDFYAQGSVSAMLHGKRGEDKTPLDWDSRLRIALGAARGIARVHAESGGKHVHGNVKSSNIFLNSQQYGCVSDLGLATITSSLAPPISRAAGYRAPEVTDTRKATQSSDVFSFGVVLLELLTAKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVARIPDQRPKMVEVVKMIENVRPMEAENRPSSTNSTTQQAVGVENSTSQQKNKHAGGGSQEIELFLDLAMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3886949 3893322 + evm.model.ptg000001l.563 HCH5g0563 544715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0563 793 SMART ubc_7 649 792 - -
HCH5g0563 793 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524(InterPro)
HCH5g0563 793 Gene3D Ubiquitin Conjugating Enzyme 643 793 IPR016135 -
HCH5g0563 793 Gene3D Phosphorylase Kinase; domain 1 293 400 - -
HCH5g0563 793 FunFam pollen receptor-like kinase 1 295 400 - -
HCH5g0563 793 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515(InterPro)
HCH5g0563 793 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
HCH5g0563 793 ProSiteProfiles Protein kinase domain profile. 326 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0563 793 Pfam Leucine Rich Repeat 187 207 IPR001611 GO:0005515(InterPro)
HCH5g0563 793 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
HCH5g0563 793 SUPERFAMILY UBC-like 645 792 IPR016135 -
HCH5g0563 793 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 719 734 IPR023313 -
HCH5g0563 793 FunFam Probable inactive receptor kinase RLK902 24 183 - -
HCH5g0563 793 MobiDBLite consensus disorder prediction 599 634 - -
HCH5g0563 793 CDD UBCc 648 787 IPR000608 -
HCH5g0563 793 Pfam Protein tyrosine and serine/threonine kinase 330 593 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g0563 793 MobiDBLite consensus disorder prediction 602 632 - -
HCH5g0563 793 Gene3D Transferase(Phosphotransferase) domain 1 402 623 - -
HCH5g0563 793 PANTHER OS05G0588300 PROTEIN 7 607 IPR050994 -
HCH5g0563 793 Gene3D Ribonuclease Inhibitor 25 240 IPR032675 -
HCH5g0563 793 SUPERFAMILY L domain-like 37 208 - -
HCH5g0563 793 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 646 792 IPR000608 -
HCH5g0563 793 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
HCH5g0563 793 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 608 - -
HCH5g0563 793 Pfam Ubiquitin-conjugating enzyme 650 786 IPR000608 -
HCH5g0563 793 FunFam Ubiquitin-conjugating enzyme 28, E2 646 793 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1283 HCH-Chr11:44876452 HCH5g0563 HCH-Chr5:3886949 3.00E-84 dispersed
HCH5g0563 HCH-Chr5:3886949 HCH5g0854 HCH-Chr5:6927688 8.80E-167 dispersed
HCH11g0738 HCH-Chr11:35914113 HCH5g0563 HCH-Chr5:3886949 4.80E-53 transposed
HCH12g1461 HCH-Chr12:39921661 HCH5g0563 HCH-Chr5:3886949 2.20E-79 transposed
HCH13g1386 HCH-Chr13:41786959 HCH5g0563 HCH-Chr5:3886949 3.80E-16 transposed
HCH2g0970 HCH-Chr2:53026899 HCH5g0563 HCH-Chr5:3886949 3.30E-217 transposed
HCH2g1452 HCH-Chr2:56113681 HCH5g0563 HCH-Chr5:3886949 4.60E-47 transposed
HCH6g0636 HCH-Chr6:38115525 HCH5g0563 HCH-Chr5:3886949 3.70E-37 transposed
HCH8g1510 HCH-Chr8:49284753 HCH5g0563 HCH-Chr5:3886949 3.70E-34 transposed
HCH9g0845 HCH-Chr9:5979777 HCH5g0563 HCH-Chr5:3886949 8.70E-84 transposed
HCH9g0954 HCH-Chr9:7088962 HCH5g0563 HCH-Chr5:3886949 3.60E-24 transposed
HCH11g1282 HCH-Chr11:44872426 HCH5g0563 HCH-Chr5:3886949 1.60E-166 wgd
HCH5g0563 HCH-Chr5:3886949 HCH6g1244 HCH-Chr6:46800211 1.90E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81505 PF07714 PK_Tyr_Ser-Thr 2.90E-31 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0563 - - - 0.0