Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0564 ATGGAAATGGAGTTTGGTTTTAATCTCCCAATCAAATACACAGAGCATCGTGAAAATTTCAACCTCGTTTCCATCCCTGAAATCAAGCCTCGACTTGTACGGATTTCAGTCACTGACGGCGATGCTACTGATTCCTCTACTGATGACGAAGCTGAACCCTTCATTCGTCATCGAGTCAAGAAGTTTATCAACGAAATTACCATCGAGCCGTCGTGTTCAGCCGCGTGTTCTCGATCGACAAGGACTGCCCGGCGTAGGGTGGCTGGGAAATGTGGGATTTCGGCGAGGAAGCCGGACAAGTCGTTGAAAATGCAAGATGGTAAGAAGTTCCGTGGCGTTAGACAGCGGCCGTGGGGGAAATGGGCGGCGGAAATTAGAGACCCTCTCCGCCGTGTACGGCTGTGGTTAGGAACTTACGACACGGCCGAGGAAGCCGCAATGGTTTATGATAACGCTGCCATTCAACTCCGGGGACCTGACGCGTTAACTAACTTCACTCCCCCACCGCCGGCGAAATCATGCTCCGGTTACATTTCCGGCGAGGAGTCGAACAGTAATGTTTGGTCTCCCACATCGGTGCTCCGGTGTCCATCTCCGACGACCCAGAAAGATACTTCTTCGGACGAGGTCGGTGAAGAAATCCTGGACGGACACGACAGTTCGTGTGTGTCGGAAAATTTCTCGGACTTTTCGAATTCCGATACGTTTATTCCGAATGATATATTTAGCTTCGAAACTTCGATTCCTAGTCCTTTTGACGAGATGGGTCTCCAATTCCAAGACGGTTTGATGACGAACGATTTAGTATTTCCGAGCCCTACTGAAGAACTCGGATTCGGATTCGGGTTTGATTACCCGAGTTTCCTACCCGACGATTACTTTCAAGACTTTGGTGATGTATTCGGGTCGGATCCATTCGTCGTGCTTTGA 930 49.78 MEMEFGFNLPIKYTEHRENFNLVSIPEIKPRLVRISVTDGDATDSSTDDEAEPFIRHRVKKFINEITIEPSCSAACSRSTRTARRRVAGKCGISARKPDKSLKMQDGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTPPPPAKSCSGYISGEESNSNVWSPTSVLRCPSPTTQKDTSSDEVGEEILDGHDSSCVSENFSDFSNSDTFIPNDIFSFETSIPSPFDEMGLQFQDGLMTNDLVFPSPTEELGFGFGFDYPSFLPDDYFQDFGDVFGSDPFVVL 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3904143 3905072 + evm.model.ptg000001l.564 HCH5g0564 544716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0564 309 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 224 IPR050913 -
HCH5g0564 309 FunFam Ethylene-responsive transcription factor 2 108 167 - -
HCH5g0564 309 SUPERFAMILY DNA-binding domain 109 166 IPR016177 GO:0003677(InterPro)
HCH5g0564 309 Pfam AP2 domain 109 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0564 309 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0564 309 CDD AP2 108 165 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0564 309 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0564 309 SMART rav1_2 109 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0564 309 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0564 309 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0969 HCH-Chr2:53023770 HCH5g0564 HCH-Chr5:3904143 1.00E-28 dispersed
HCH5g0564 HCH-Chr5:3904143 HCH5g0858 HCH-Chr5:7006842 6.50E-41 dispersed
HCH11g1284 HCH-Chr11:44893889 HCH5g0564 HCH-Chr5:3904143 3.10E-47 wgd
HCH5g0564 HCH-Chr5:3904143 HCH6g1245 HCH-Chr6:46817994 6.20E-76 wgd
HCH5g0564 HCH-Chr5:3904143 HCH7g1680 HCH-Chr7:48752887 4.50E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33607 PF00847 AP2 1.20E-13 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0564 - - - 0.0