Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0574 ATGGAAAATGGCTGGAGAAGCAAGCAGGAAGCCATGATTAGTGAGCTAATTCAAGGCATGGAATTAGCTAAACAGTTGAGGGAAGAGTTGTGTTCAATATCTCCAACTGAAGATAATGAATTATCATTAGTAGAAGGGATACTATCGGCATACGAGAAGGCTCTTTCAGCTTTGAAATGGAGCGGACCAACGACACGTACTCAGACAGTAGCAGTAACTGCAAATTTGCCAACAATCCATACTCAGACACAGGCAGTTACTGCATGTTTGCCAACGATCCATACTCCAACAGTAGCAGTAACTATGAGTTTGCCAACGTCTCCTACCTCTGTTGATGGAAGTCCTCACAGTGATGACTTTGACATTAGCTTCAAAGATCTCAATGACCTGAACAAAGGCTTAAAGAAGAGAAAGTCATTGGCCAGATGGATAAAACAAGTGCGAGTGAGCTCAGAGACGGGACTGGAAGGTTCATGTGATGATGGCCATAACTGGAGGAAATATGGGCAGAAAGATATCTTGGGAGCCAAATATCCCAGAAGCTATTATAGATGCACTTATCGTAACAGTCAAGACTGTTGGGCAACAAAGCAAGTGCAAAGGTCCGATGAAGATCCCTCTGTATTCGAAATCACGTATCGAGGAAAACACAATTGCTCCCATGGAAACAATACAGTCCCACCTCCAATATCACCAGAAAAACAAGAACAGAAGCAAATCAACTACGGTAATGATATTGGACACGAACGGCAACCACAAAACACAACATCTACATCCCTCTGTCCTTCAACTGGATTTGGATTGACAGATACAGATAGCAAAAATCATCAGTTTTCACACCCAGTCATGGATGATAATAATTGGGCAGAGAGCTTTTCCCTGACACCCGAATCAAGCTACGTAATGCAATTTCCATGCCAGAGTAACTTGGAAGGGTTTCAGAGCCTATACCAATCAGAAACTAATATCACAGACACTCTTTTCAGCCAAAACTACAACTATTTTTACTAA 1011 42.04 MENGWRSKQEAMISELIQGMELAKQLREELCSISPTEDNELSLVEGILSAYEKALSALKWSGPTTRTQTVAVTANLPTIHTQTQAVTACLPTIHTPTVAVTMSLPTSPTSVDGSPHSDDFDISFKDLNDLNKGLKKRKSLARWIKQVRVSSETGLEGSCDDGHNWRKYGQKDILGAKYPRSYYRCTYRNSQDCWATKQVQRSDEDPSVFEITYRGKHNCSHGNNTVPPPISPEKQEQKQINYGNDIGHERQPQNTTSTSLCPSTGFGLTDTDSKNHQFSHPVMDDNNWAESFSLTPESSYVMQFPCQSNLEGFQSLYQSETNITDTLFSQNYNYFY 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3954412 3955735 - evm.model.ptg000001l.574 HCH5g0574 544726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0574 336 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 11 309 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
HCH5g0574 336 Pfam WRKY DNA -binding domain 160 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0574 336 SMART WRKY_cls 159 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0574 336 MobiDBLite consensus disorder prediction 245 266 - -
HCH5g0574 336 ProSiteProfiles WRKY domain profile. 160 218 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0574 336 Gene3D WRKY domain 145 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0574 336 FunFam WRKY transcription factor 53 145 222 - -
HCH5g0574 336 SUPERFAMILY WRKY DNA-binding domain 159 221 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0574 HCH-Chr5:3954412 HCH6g0924 HCH-Chr6:44014255 4.30E-14 dispersed
HCH11g1296 HCH-Chr11:44962589 HCH5g0574 HCH-Chr5:3954412 1.30E-32 wgd
HCH5g0574 HCH-Chr5:3954412 HCH6g1257 HCH-Chr6:46898098 3.30E-70 wgd
HCH5g0574 HCH-Chr5:3954412 HCH7g1694 HCH-Chr7:48840750 6.20E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33608 PF03106 WRKY 1.40E-26 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0574 - - - 0.0