Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0599 ATGCCGGAATCAGAGAATGGAGCGTCGGCGCCGGCGACACCGGGGACGCCGGGGGGACCGTTGTTTTCAAGTTTGAGGGTGGATTCGTTGTCGTACGATCGGAAGTCAATGCCCCGGTGCAAGTGCTTCCCCGTGACTGCTCCCACGTGGGGTCAGTCTCACACGTGCTTTACTGACTTCCCTTCTCCGGATGTTTCTCTCACCCGGAAGCTTGGTGCAGAATTTGTGGGGACATTTATCCTGATATTCGGAGCAACGGCGGGACCGATCGTTAACCAAAAGTACAACGGCGTCGAGACATTGATCGGCAATGCAGCCTGCGCTGGGCTGGCGGTGATGGTGGTGATTCTATCGACGGGTCATATATCAGGAGCTCATCTCAATCCATCCCTCACCATTGCATTTGCAGCTCTAAGACACTTCCCATGGGTTCAAGTTCCAGCATACATTGCAGCCCAGGTCTCTGCCTCTATCTGTGCTTCTTTTGCTCTCAAAGGTGTTTTTCATCCCTTCATGTCCGGCGGTGTCACCGTTCCTTCCGTTAGCACCGGACAGGCTTTCGCTCTCGAATTCATCATCACTTTCAATCTCTTGTTCGTCGTCACTGCTGTTGCCACTGATACTCGTGCGGTGGGAGAGATGGCTGGCATTGCGGTCGGAGCTACAGTGTTGCTCAACATTCTAGTAGCAGGGCCATCAACTGGCGCTTCAATGAATCCAGTGCGCACTCTTGGCCCAGCCGTTGCAGCCGGGAATTACAAGGCATTGTGGATATACCTGGTGGCGCCTACGCTGGGAGCGATCGTGGGGGCCGGAACCTACACGGCGGTGAAGCTGAGAGACGATGAGGTCGATGAACCTCAGCGACAGGCACGGAGCTTCCGCTAA 888 55.18 MPESENGASAPATPGTPGGPLFSSLRVDSLSYDRKSMPRCKCFPVTAPTWGQSHTCFTDFPSPDVSLTRKLGAEFVGTFILIFGATAGPIVNQKYNGVETLIGNAACAGLAVMVVILSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAVGEMAGIAVGATVLLNILVAGPSTGASMNPVRTLGPAVAAGNYKALWIYLVAPTLGAIVGAGTYTAVKLRDDEVDEPQRQARSFR 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4136146 4140000 + evm.model.ptg000001l.599 HCH5g0599 544751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0599 295 SUPERFAMILY Aquaporin-like 66 284 IPR023271 -
HCH5g0599 295 ProSitePatterns MIP family signature. 126 134 IPR022357 -
HCH5g0599 295 MobiDBLite consensus disorder prediction 1 21 - -
HCH5g0599 295 PRINTS Major intrinsic protein family signature 108 132 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0599 295 PRINTS Major intrinsic protein family signature 257 277 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0599 295 PRINTS Major intrinsic protein family signature 69 88 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0599 295 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0599 295 PRINTS Major intrinsic protein family signature 145 164 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0599 295 PRINTS Major intrinsic protein family signature 189 207 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0599 295 Gene3D Glycerol uptake facilitator protein. 54 291 IPR023271 -
HCH5g0599 295 FunFam Aquaporin NIP2-1 57 289 - -
HCH5g0599 295 Pfam Major intrinsic protein 65 274 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0599 295 PANTHER AQUAPORIN NIP2-1 64 281 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0599 HCH-Chr5:4136146 HCH6g0285 HCH-Chr6:3991730 6.80E-88 dispersed
HCH5g0599 HCH-Chr5:4136146 HCH9g0227 HCH-Chr9:1349192 2.50E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0599 K09874 - csv:101212651 540.036