Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0601 ATGGAAGGATCAGGGTCAGGATCAGGATCTCGATACGGAGTTTCTCCTCCGGAGATTAACACTCCGCCGTTAACCGTGGAAGCAATAACCGATTCTCAACAAGTGGAAGTAGCTTCACCAATTAGTAGCCGTCCTCCAGCGCAATCGTCATTGAATTATCAACAACTCATGCATCTTTCTACTCCTACTGGTGCTGGGCAGGTGGGAGCTGACGACGACGCACTCAGGGCGGCCGTCGGAGAGGAAGCTGACCGTAGCGGAGGCGGTGGCGGCGGTGGAAATAGATGGCCTCGTCAAGAAACACTAGCCCTTTTAAAGATTAGGTCCGATATGGATACGGCGTTTCGTGATGCTACACTAAAAGGACCTCTTTGGGAAGAAGTTTCCAGGAAGCTAGCGGAGCTTGGATATGGAAGAAGTGGTAAGAAATGCAAAGAGAAATTTGAGAATGTTCAAAAATATTACAAGCGCACAAAAGAAGGCCGTGGAGGTCGTCAAGATGGAAAAACCTACAAGTTTTTTAGTGAACTAGAGGCTCTCCATAGCGCCAACGTGGCCGCACCAACAACCGTCGGTATCATCACAAGCAGCCAACTCAATGCTGCCACTCCCGTTTCCGTTACCATTGGGATCAACAATCCAATTCCCATCTCATCCGTTAAGATTTCTTCCCAAACCCCAATGGGAATCTTTTCACCTTCTGATCATTTCAGTGTCAGGCCTGCTTTGGCTGCTGCACCCGCAGCCGTCATTCCTCCGCTCGCTGGTGTCAGCTTCTCTTCCGATACCGAGTCCTCGTCTACGGGTACTGATGATGATGATAATGATGACGACGATGATTTTGATGGTGTGCCGTTGGATGTAGCTGGGACGAGTACTCGTAAACGTAGACGAGGCGAGTCGTCGTCGAAGGGAACGCCGACGCCGACAACGGGGTCTAGAACACATAGGATGATGATGGAGTTTTTCGAGGGTTTAATGAAACAAGTAATGCAGAAGCAGGAGGTAATGCAACAAAGGTTTTTGGAAGCTATTGAGAAGAGAGAGCAAGATAGGATGGTAAGAGAAGAGACATGGAAGAGGCAAGAGATGGCTAGGCTGAGCCGTGAGCAAGAGCGCATGGCTCAAGAAAGGGCTGTTGTTGCTTCTAGAGATGCTGCCATAATTGCTTTTCTTCAGAAATTTACTGGACAAAACATTCAATTACCTCAACAAATCAATATCCCTTCTTCTGCCCCACAGAAACATGATCATGTGCCTGTGGCAGTGGCAGTGACAGTGCCAATGCCACCATCTCCTGTCCCCATGACCCCAACGCCGCCTCCACCACCACCAACCCAATTCCCACAACAGCAAAACCCATACCAAATTCAAGAGCATGATCAATCTCCAAATACAGAAATGCAGCTACCACAATCCAATATTTTGCCATTAGCAACGACTGTCTCGTTAGAGCCAAGATTACTACCATACCAAGAAAGTAATGCAGGAGCAGGAGATGGAAGCTCTGAGCCAGCTTCCTCGAGGTGGCCGAAACCGGAAGTTCTCGCACTTATAAAGATAAGAGGTGGGCTTGAATTTAAGTATCAAGAGTCGGGTCCAAAGGGTCCTCTTTGGGAAGAAATTTCTGCTGCCATGCAGCGGATGGGATACAAGAGAAGCTCCAAGAGATGCAAGGAGAAATGGGAAAATATTAACAAGTATTTCAAGAAGGTGAAGGAGAGTAACAAGAAACGCCGGGAAGATTCAAAGACCTGCCCTTACTTTGAAGAACTCGATGCTCTTCACCGGAAGAAGAATCTCGGTGGCTCCGATGGAAGCGGTGGCAGCGGAAGCAGACTTGAACAAGACCTGCATTTAGTACAGCAAGAACATATTGATGTAGAAATGGAAATAGCCCCATCAACGGTGATTCCACTTCGTTCAGATGCCGATACTCATAAGACAATTGCTAGCAGTTCGGCTTCGGGTTTATCTGCGAGTCTCTTCGGAGAAGGAGCTGAAGATGCAGCCACGAAGCCAGAAGACATTGTGAATGAGTTGATGGAGCTACAGGATCTTTATAGGCAACAACAGCATCCACAAAAGTTAATGGTGAATGAATATGATAAAGTTGAAGAAGAACCCAGTAGCGAGGAGGAGGAGGAGGAGGACTATTGCAGTGATGAGGAAGAATCAGCAAAGAGAAATATCGATAATTATAAGATAAACTTTCAAAGACGAAATGTAGCCAATTCCAATGGAGTTGGGAGTGAGTTTCCCTCCATGGCCGTGGTTCAATAG 2283 47.31 MEGSGSGSGSRYGVSPPEINTPPLTVEAITDSQQVEVASPISSRPPAQSSLNYQQLMHLSTPTGAGQVGADDDALRAAVGEEADRSGGGGGGGNRWPRQETLALLKIRSDMDTAFRDATLKGPLWEEVSRKLAELGYGRSGKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFSELEALHSANVAAPTTVGIITSSQLNAATPVSVTIGINNPIPISSVKISSQTPMGIFSPSDHFSVRPALAAAPAAVIPPLAGVSFSSDTESSSTGTDDDDNDDDDDFDGVPLDVAGTSTRKRRRGESSSKGTPTPTTGSRTHRMMMEFFEGLMKQVMQKQEVMQQRFLEAIEKREQDRMVREETWKRQEMARLSREQERMAQERAVVASRDAAIIAFLQKFTGQNIQLPQQINIPSSAPQKHDHVPVAVAVTVPMPPSPVPMTPTPPPPPPTQFPQQQNPYQIQEHDQSPNTEMQLPQSNILPLATTVSLEPRLLPYQESNAGAGDGSSEPASSRWPKPEVLALIKIRGGLEFKYQESGPKGPLWEEISAAMQRMGYKRSSKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFEELDALHRKKNLGGSDGSGGSGSRLEQDLHLVQQEHIDVEMEIAPSTVIPLRSDADTHKTIASSSASGLSASLFGEGAEDAATKPEDIVNELMELQDLYRQQQHPQKLMVNEYDKVEEEPSSEEEEEEDYCSDEEESAKRNIDNYKINFQRRNVANSNGVGSEFPSMAVVQ 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4163470 4166404 + evm.model.ptg000001l.601 HCH5g0601 544753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0601 760 SMART sant 92 154 IPR001005 -
HCH5g0601 760 SMART sant 506 568 IPR001005 -
HCH5g0601 760 CDD GT1 94 159 - -
HCH5g0601 760 MobiDBLite consensus disorder prediction 1 23 - -
HCH5g0601 760 MobiDBLite consensus disorder prediction 432 450 - -
HCH5g0601 760 MobiDBLite consensus disorder prediction 432 469 - -
HCH5g0601 760 FunFam Trihelix transcription factor GT-2 96 157 - -
HCH5g0601 760 CDD GT1 508 573 - -
HCH5g0601 760 PANTHER FI21293P1 72 644 - -
HCH5g0601 760 MobiDBLite consensus disorder prediction 1 15 - -
HCH5g0601 760 Gene3D - 510 571 - -
HCH5g0601 760 Gene3D - 96 157 - -
HCH5g0601 760 MobiDBLite consensus disorder prediction 703 728 - -
HCH5g0601 760 Pfam Myb/SANT-like DNA-binding domain 94 180 IPR044822 -
HCH5g0601 760 Pfam Myb/SANT-like DNA-binding domain 508 595 IPR044822 -
HCH5g0601 760 MobiDBLite consensus disorder prediction 267 284 - -
HCH5g0601 760 MobiDBLite consensus disorder prediction 706 722 - -
HCH5g0601 760 FunFam Trihelix transcription factor GT-2 510 571 - -
HCH5g0601 760 ProSiteProfiles Myb-like domain profile. 502 566 IPR001005 -
HCH5g0601 760 MobiDBLite consensus disorder prediction 451 469 - -
HCH5g0601 760 ProSiteProfiles Myb-like domain profile. 94 152 IPR001005 -
HCH5g0601 760 MobiDBLite consensus disorder prediction 257 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0726 HCH-Chr1:56076656 HCH5g0601 HCH-Chr5:4163470 3.60E-28 dispersed
HCH2g0216 HCH-Chr2:27920818 HCH5g0601 HCH-Chr5:4163470 1.20E-78 dispersed
HCH3g1028 HCH-Chr3:13975193 HCH5g0601 HCH-Chr5:4163470 5.00E-32 dispersed
HCH5g0601 HCH-Chr5:4163470 HCH8g0185 HCH-Chr8:7026078 1.80E-36 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33611 PF13837 Myb_DNA-bind_4 1.90E-22 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0601 - - - 0.0