Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0601 | ATGGAAGGATCAGGGTCAGGATCAGGATCTCGATACGGAGTTTCTCCTCCGGAGATTAACACTCCGCCGTTAACCGTGGAAGCAATAACCGATTCTCAACAAGTGGAAGTAGCTTCACCAATTAGTAGCCGTCCTCCAGCGCAATCGTCATTGAATTATCAACAACTCATGCATCTTTCTACTCCTACTGGTGCTGGGCAGGTGGGAGCTGACGACGACGCACTCAGGGCGGCCGTCGGAGAGGAAGCTGACCGTAGCGGAGGCGGTGGCGGCGGTGGAAATAGATGGCCTCGTCAAGAAACACTAGCCCTTTTAAAGATTAGGTCCGATATGGATACGGCGTTTCGTGATGCTACACTAAAAGGACCTCTTTGGGAAGAAGTTTCCAGGAAGCTAGCGGAGCTTGGATATGGAAGAAGTGGTAAGAAATGCAAAGAGAAATTTGAGAATGTTCAAAAATATTACAAGCGCACAAAAGAAGGCCGTGGAGGTCGTCAAGATGGAAAAACCTACAAGTTTTTTAGTGAACTAGAGGCTCTCCATAGCGCCAACGTGGCCGCACCAACAACCGTCGGTATCATCACAAGCAGCCAACTCAATGCTGCCACTCCCGTTTCCGTTACCATTGGGATCAACAATCCAATTCCCATCTCATCCGTTAAGATTTCTTCCCAAACCCCAATGGGAATCTTTTCACCTTCTGATCATTTCAGTGTCAGGCCTGCTTTGGCTGCTGCACCCGCAGCCGTCATTCCTCCGCTCGCTGGTGTCAGCTTCTCTTCCGATACCGAGTCCTCGTCTACGGGTACTGATGATGATGATAATGATGACGACGATGATTTTGATGGTGTGCCGTTGGATGTAGCTGGGACGAGTACTCGTAAACGTAGACGAGGCGAGTCGTCGTCGAAGGGAACGCCGACGCCGACAACGGGGTCTAGAACACATAGGATGATGATGGAGTTTTTCGAGGGTTTAATGAAACAAGTAATGCAGAAGCAGGAGGTAATGCAACAAAGGTTTTTGGAAGCTATTGAGAAGAGAGAGCAAGATAGGATGGTAAGAGAAGAGACATGGAAGAGGCAAGAGATGGCTAGGCTGAGCCGTGAGCAAGAGCGCATGGCTCAAGAAAGGGCTGTTGTTGCTTCTAGAGATGCTGCCATAATTGCTTTTCTTCAGAAATTTACTGGACAAAACATTCAATTACCTCAACAAATCAATATCCCTTCTTCTGCCCCACAGAAACATGATCATGTGCCTGTGGCAGTGGCAGTGACAGTGCCAATGCCACCATCTCCTGTCCCCATGACCCCAACGCCGCCTCCACCACCACCAACCCAATTCCCACAACAGCAAAACCCATACCAAATTCAAGAGCATGATCAATCTCCAAATACAGAAATGCAGCTACCACAATCCAATATTTTGCCATTAGCAACGACTGTCTCGTTAGAGCCAAGATTACTACCATACCAAGAAAGTAATGCAGGAGCAGGAGATGGAAGCTCTGAGCCAGCTTCCTCGAGGTGGCCGAAACCGGAAGTTCTCGCACTTATAAAGATAAGAGGTGGGCTTGAATTTAAGTATCAAGAGTCGGGTCCAAAGGGTCCTCTTTGGGAAGAAATTTCTGCTGCCATGCAGCGGATGGGATACAAGAGAAGCTCCAAGAGATGCAAGGAGAAATGGGAAAATATTAACAAGTATTTCAAGAAGGTGAAGGAGAGTAACAAGAAACGCCGGGAAGATTCAAAGACCTGCCCTTACTTTGAAGAACTCGATGCTCTTCACCGGAAGAAGAATCTCGGTGGCTCCGATGGAAGCGGTGGCAGCGGAAGCAGACTTGAACAAGACCTGCATTTAGTACAGCAAGAACATATTGATGTAGAAATGGAAATAGCCCCATCAACGGTGATTCCACTTCGTTCAGATGCCGATACTCATAAGACAATTGCTAGCAGTTCGGCTTCGGGTTTATCTGCGAGTCTCTTCGGAGAAGGAGCTGAAGATGCAGCCACGAAGCCAGAAGACATTGTGAATGAGTTGATGGAGCTACAGGATCTTTATAGGCAACAACAGCATCCACAAAAGTTAATGGTGAATGAATATGATAAAGTTGAAGAAGAACCCAGTAGCGAGGAGGAGGAGGAGGAGGACTATTGCAGTGATGAGGAAGAATCAGCAAAGAGAAATATCGATAATTATAAGATAAACTTTCAAAGACGAAATGTAGCCAATTCCAATGGAGTTGGGAGTGAGTTTCCCTCCATGGCCGTGGTTCAATAG | 2283 | 47.31 | MEGSGSGSGSRYGVSPPEINTPPLTVEAITDSQQVEVASPISSRPPAQSSLNYQQLMHLSTPTGAGQVGADDDALRAAVGEEADRSGGGGGGGNRWPRQETLALLKIRSDMDTAFRDATLKGPLWEEVSRKLAELGYGRSGKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFSELEALHSANVAAPTTVGIITSSQLNAATPVSVTIGINNPIPISSVKISSQTPMGIFSPSDHFSVRPALAAAPAAVIPPLAGVSFSSDTESSSTGTDDDDNDDDDDFDGVPLDVAGTSTRKRRRGESSSKGTPTPTTGSRTHRMMMEFFEGLMKQVMQKQEVMQQRFLEAIEKREQDRMVREETWKRQEMARLSREQERMAQERAVVASRDAAIIAFLQKFTGQNIQLPQQINIPSSAPQKHDHVPVAVAVTVPMPPSPVPMTPTPPPPPPTQFPQQQNPYQIQEHDQSPNTEMQLPQSNILPLATTVSLEPRLLPYQESNAGAGDGSSEPASSRWPKPEVLALIKIRGGLEFKYQESGPKGPLWEEISAAMQRMGYKRSSKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFEELDALHRKKNLGGSDGSGGSGSRLEQDLHLVQQEHIDVEMEIAPSTVIPLRSDADTHKTIASSSASGLSASLFGEGAEDAATKPEDIVNELMELQDLYRQQQHPQKLMVNEYDKVEEEPSSEEEEEEDYCSDEEESAKRNIDNYKINFQRRNVANSNGVGSEFPSMAVVQ | 760 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4163470 | 4166404 | + | evm.model.ptg000001l.601 | HCH5g0601 | 544753 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0601 | 760 | SMART | sant | 92 | 154 | IPR001005 | - | |
HCH5g0601 | 760 | SMART | sant | 506 | 568 | IPR001005 | - | |
HCH5g0601 | 760 | CDD | GT1 | 94 | 159 | - | - | |
HCH5g0601 | 760 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
HCH5g0601 | 760 | MobiDBLite | consensus disorder prediction | 432 | 450 | - | - | |
HCH5g0601 | 760 | MobiDBLite | consensus disorder prediction | 432 | 469 | - | - | |
HCH5g0601 | 760 | FunFam | Trihelix transcription factor GT-2 | 96 | 157 | - | - | |
HCH5g0601 | 760 | CDD | GT1 | 508 | 573 | - | - | |
HCH5g0601 | 760 | PANTHER | FI21293P1 | 72 | 644 | - | - | |
HCH5g0601 | 760 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
HCH5g0601 | 760 | Gene3D | - | 510 | 571 | - | - | |
HCH5g0601 | 760 | Gene3D | - | 96 | 157 | - | - | |
HCH5g0601 | 760 | MobiDBLite | consensus disorder prediction | 703 | 728 | - | - | |
HCH5g0601 | 760 | Pfam | Myb/SANT-like DNA-binding domain | 94 | 180 | IPR044822 | - | |
HCH5g0601 | 760 | Pfam | Myb/SANT-like DNA-binding domain | 508 | 595 | IPR044822 | - | |
HCH5g0601 | 760 | MobiDBLite | consensus disorder prediction | 267 | 284 | - | - | |
HCH5g0601 | 760 | MobiDBLite | consensus disorder prediction | 706 | 722 | - | - | |
HCH5g0601 | 760 | FunFam | Trihelix transcription factor GT-2 | 510 | 571 | - | - | |
HCH5g0601 | 760 | ProSiteProfiles | Myb-like domain profile. | 502 | 566 | IPR001005 | - | |
HCH5g0601 | 760 | MobiDBLite | consensus disorder prediction | 451 | 469 | - | - | |
HCH5g0601 | 760 | ProSiteProfiles | Myb-like domain profile. | 94 | 152 | IPR001005 | - | |
HCH5g0601 | 760 | MobiDBLite | consensus disorder prediction | 257 | 315 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0726 | HCH-Chr1:56076656 | HCH5g0601 | HCH-Chr5:4163470 | 3.60E-28 | dispersed | |
HCH2g0216 | HCH-Chr2:27920818 | HCH5g0601 | HCH-Chr5:4163470 | 1.20E-78 | dispersed | |
HCH3g1028 | HCH-Chr3:13975193 | HCH5g0601 | HCH-Chr5:4163470 | 5.00E-32 | dispersed | |
HCH5g0601 | HCH-Chr5:4163470 | HCH8g0185 | HCH-Chr8:7026078 | 1.80E-36 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33611 | PF13837 | Myb_DNA-bind_4 | 1.90E-22 | CL0123 | HCH | TF |
Pathway information
