Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0607 ATGAGCTCCCATTCTTCAGCTGAAGACTGTCTCGGTTGGGCCGCAAGAGATCCATCTGGGTTTCTATCTCCTTACAAATTTAGCCGTAGGATTCTTGGAGATGACGATGTTTCAATTTCAATTACGCATTGCGGAGTTTGTTATGCAGATGTTATATGGACTAGAAATAAACTTGGAGATGCTAAGTATCCTTTGGTGCCTGGACATGAGATTGCAGGACTTGTTAAAGAGGTTGGCTCAAATGTTCATCGATTCAAAGTTGGAGATCATGTTGGAGTAGGAACTTATGTGAATTCTTGCAGACAATGCGAGTATTGTGAAGATGGGCAAGAAGTTATTTGCATTAATGGATCTATTCACACTTTTAATTCTATTGATGTTGATGGTACTATTACTAAAGGAGGATACTCCAATTACATAGTTGTCCATGAGAGATACTGCTTCAAAATACCTGACAGTTATCCATTAGCATCAGCTGCTCCTCTGCTTTGTGCTGGAATTACTGTTTATGCTCCTATGATTCGCCATAAGATGAATCAGCCTGGTAAATCTCTTGGAGTGATTGGGCTTGGTGGTCTTGGTCACTTAGCCGTGAAGTTTGGAAAGGCGTTCGGACTCAATGTGACTATTTTTAGCACTAGCATATCCAAGAAAGAGGAAGCCTTGAGCCTTCTTGGAGCAGACAAATTTGTTATCTCATCTGACAGAGAGCAGATAGAGGCCTTGTCCAAGTCTCTCGACTTTATTATCGATACTGCATCGGGTGATCACCCATTCGATCCTTACATGTCTACACTGAAGATTGGTGGTGTTATGGTCCTGGTGGGGTTTCCTAGTGAGGTTAAGTTCAGTCCCGCAAGCCTGAATTTGGGTATGAGAACCATTTCTGGTAGCATAACTGGGGGCACTAAAGTGACACAAGAAATGATCGACTTCTGTGCTACTCATGGAATCTATCCAAACATAGAAGTTATTCCAATTCAGTACTCAAATGAAGCTATTGAGAGGGTACTAAAGAATGATGTCAAGTATCGATTTGTAATCGATATCCAAGGCTCCTTGACATGA 1068 41.48 MSSHSSAEDCLGWAARDPSGFLSPYKFSRRILGDDDVSISITHCGVCYADVIWTRNKLGDAKYPLVPGHEIAGLVKEVGSNVHRFKVGDHVGVGTYVNSCRQCEYCEDGQEVICINGSIHTFNSIDVDGTITKGGYSNYIVVHERYCFKIPDSYPLASAAPLLCAGITVYAPMIRHKMNQPGKSLGVIGLGGLGHLAVKFGKAFGLNVTIFSTSISKKEEALSLLGADKFVISSDREQIEALSKSLDFIIDTASGDHPFDPYMSTLKIGGVMVLVGFPSEVKFSPASLNLGMRTISGSITGGTKVTQEMIDFCATHGIYPNIEVIPIQYSNEAIERVLKNDVKYRFVIDIQGSLT 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4228455 4231949 + evm.model.ptg000001l.607 HCH5g0607 544759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0607 355 FunFam Uncharacterized protein 13 164 - -
HCH5g0607 355 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491(InterPro)
HCH5g0607 355 FunFam Putative cinnamyl alcohol dehydrogenase 6 321 350 - -
HCH5g0607 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
HCH5g0607 355 SUPERFAMILY GroES-like 16 183 IPR011032 -
HCH5g0607 355 Gene3D - 13 350 - -
HCH5g0607 355 PANTHER ALDEHYDE REDUCTASE 6 351 IPR047109 GO:0016616(InterPro)|GO:0016616(PANTHER)
HCH5g0607 355 Pfam Zinc-binding dehydrogenase 192 314 IPR013149 -
HCH5g0607 355 CDD CAD1 12 349 IPR047109 GO:0016616(InterPro)
HCH5g0607 355 Pfam Alcohol dehydrogenase GroES-like domain 33 152 IPR013154 -
HCH5g0607 355 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
HCH5g0607 355 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 185 212 IPR029752 -
HCH5g0607 355 Gene3D - 165 320 - -
HCH5g0607 355 FunFam Cinnamyl alcohol dehydrogenase 165 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1853 HCH-Chr4:48358294 HCH5g0607 HCH-Chr5:4228455 4.50E-86 dispersed
HCH5g0607 HCH-Chr5:4228455 HCH7g0690 HCH-Chr7:7911404 1.30E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0607 K00083 - csv:101211438 641.728