Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0612 ATGGATTTTAGTCTTAATAGATTCAATAATCACCATCCGCAGCCGAGAGCGGCTGCCGTGGTTGATTTGATGATGATGGAGTCGTCTTCTTCTTCTCCTTCTCCTCCTCTTCCGCCGATTTCTTCGTCGTCGGTTTTTGAGCTGGAGGAAGCTACTACTGCGGCCGTTGTCGGATCAAGAGTCCAAGATTCCGACAACGACCATGGAATTAGGATTGGAATTGGAAGCAACTGTTGCAGCACTGATCATGCTGAAAAGGAACACATGTTTGACAAAGTAGTTACACCAAGTGATGTCGGGAAGCTAAACCGTCTTGTCATACCTAAACAACATGCTGAGAGGTTTTTCCCGCTCAATTCCTCCACCAACGAGAAGGGACTTCTCTTGAATTTCGAGGATCGAAACGGGAAATCATGGAGGTTTCGATACTCTTACTGGAACAGCAGCCAAAGCTATGTCATGACCAAAGGATGGAGCCGTTTCGTCAAGGAGAAGAGGCTCGATGCCGGTGATATCGTCTCTTTCGAACGCGGAGTCGGCGAGCTCGCTAGAGATCGACTTTTCATCGATTGGAGGCGTCGACCTGAACATCCACCGTCTCTCCGTCATAACCTAATGCAACTGCCGCCGCACGCTCACGGCCAATTCTCATGCCGACCGAGCATCGTCCCCGCGGCCGCTTGGAGCTCCTTAGTGTGGCGGCCTACAGGACCATATCCACCGGTGCCTAGGGACCACATGCACTTGTCGCCATTAAATAACAATAGCACAATTGATTGGAGTAATAGCTATGGAAGAAGTGGGGGTTATTCATATGGATATGGAAGCGTGGTAAAGCCAGAATCAGCTGAATCTGCAGTATATTACTTAAGATCAGGAATGGAAGACGGCCGTGGTGGAGGAGTATCCCCACAATTAGTAGAAGGACAAGAGATTGGAATGTTGCGGCAACGGCAGATACCAACAAGTGATGACCGTGGCGGCGGTGGTGGTGGTGATGGTGCTGTCATTTACGAGTCGATGCCGATGGTGGTCCAAGGAAACTTACGTACGCCAAAGAGATCACGTCTGCGGCTATTTGGTGTAAACATGGAGTGTCCCATTTCGTCTGCAGCTTCTTCGGATGAATGTGACTTATTCTTGTCTTCTTCAAACCATACCACCCCCGCAATTTCCTCCTCCACCACTCAATTCCCGCCTCCGTCTCCTCCGTCGCCACACGGCTAA 1227 49.96 MDFSLNRFNNHHPQPRAAAVVDLMMMESSSSSPSPPLPPISSSSVFELEEATTAAVVGSRVQDSDNDHGIRIGIGSNCCSTDHAEKEHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLNSSTNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFERGVGELARDRLFIDWRRRPEHPPSLRHNLMQLPPHAHGQFSCRPSIVPAAAWSSLVWRPTGPYPPVPRDHMHLSPLNNNSTIDWSNSYGRSGGYSYGYGSVVKPESAESAVYYLRSGMEDGRGGGVSPQLVEGQEIGMLRQRQIPTSDDRGGGGGGDGAVIYESMPMVVQGNLRTPKRSRLRLFGVNMECPISSAASSDECDLFLSSSNHTTPAISSSTTQFPPPSPPSPHG 408
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 4302873 4304099 - evm.model.ptg000001l.612 HCH5g0612 544764
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0612 408 ProSiteProfiles B3 DNA-binding domain profile. 90 195 IPR003340 GO:0003677(InterPro)
HCH5g0612 408 SMART B3_2 90 195 IPR003340 GO:0003677(InterPro)
HCH5g0612 408 FunFam B3 domain-containing protein 83 204 - -
HCH5g0612 408 CDD B3_DNA 88 177 IPR003340 GO:0003677(InterPro)
HCH5g0612 408 MobiDBLite consensus disorder prediction 381 408 - -
HCH5g0612 408 Gene3D - 83 204 IPR015300 -
HCH5g0612 408 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 81 364 IPR044800 GO:0003700(InterPro)
HCH5g0612 408 SUPERFAMILY DNA-binding pseudobarrel domain 86 196 IPR015300 -
HCH5g0612 408 MobiDBLite consensus disorder prediction 381 395 - -
HCH5g0612 408 Pfam B3 DNA binding domain 90 194 IPR003340 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0442 HCH-Chr11:4388270 HCH5g0612 HCH-Chr5:4302873 6.90E-42 dispersed
HCH5g0612 HCH-Chr5:4302873 HCH7g1801 HCH-Chr7:49546770 1.40E-35 dispersed
HCH5g0612 HCH-Chr5:4302873 HCH1g0802 HCH-Chr1:56706788 2.10E-39 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33612 PF02362 B3 5.70E-29 CL0405 HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0612 K09287 - csv:101211271 310.842