Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g0612 | ATGGATTTTAGTCTTAATAGATTCAATAATCACCATCCGCAGCCGAGAGCGGCTGCCGTGGTTGATTTGATGATGATGGAGTCGTCTTCTTCTTCTCCTTCTCCTCCTCTTCCGCCGATTTCTTCGTCGTCGGTTTTTGAGCTGGAGGAAGCTACTACTGCGGCCGTTGTCGGATCAAGAGTCCAAGATTCCGACAACGACCATGGAATTAGGATTGGAATTGGAAGCAACTGTTGCAGCACTGATCATGCTGAAAAGGAACACATGTTTGACAAAGTAGTTACACCAAGTGATGTCGGGAAGCTAAACCGTCTTGTCATACCTAAACAACATGCTGAGAGGTTTTTCCCGCTCAATTCCTCCACCAACGAGAAGGGACTTCTCTTGAATTTCGAGGATCGAAACGGGAAATCATGGAGGTTTCGATACTCTTACTGGAACAGCAGCCAAAGCTATGTCATGACCAAAGGATGGAGCCGTTTCGTCAAGGAGAAGAGGCTCGATGCCGGTGATATCGTCTCTTTCGAACGCGGAGTCGGCGAGCTCGCTAGAGATCGACTTTTCATCGATTGGAGGCGTCGACCTGAACATCCACCGTCTCTCCGTCATAACCTAATGCAACTGCCGCCGCACGCTCACGGCCAATTCTCATGCCGACCGAGCATCGTCCCCGCGGCCGCTTGGAGCTCCTTAGTGTGGCGGCCTACAGGACCATATCCACCGGTGCCTAGGGACCACATGCACTTGTCGCCATTAAATAACAATAGCACAATTGATTGGAGTAATAGCTATGGAAGAAGTGGGGGTTATTCATATGGATATGGAAGCGTGGTAAAGCCAGAATCAGCTGAATCTGCAGTATATTACTTAAGATCAGGAATGGAAGACGGCCGTGGTGGAGGAGTATCCCCACAATTAGTAGAAGGACAAGAGATTGGAATGTTGCGGCAACGGCAGATACCAACAAGTGATGACCGTGGCGGCGGTGGTGGTGGTGATGGTGCTGTCATTTACGAGTCGATGCCGATGGTGGTCCAAGGAAACTTACGTACGCCAAAGAGATCACGTCTGCGGCTATTTGGTGTAAACATGGAGTGTCCCATTTCGTCTGCAGCTTCTTCGGATGAATGTGACTTATTCTTGTCTTCTTCAAACCATACCACCCCCGCAATTTCCTCCTCCACCACTCAATTCCCGCCTCCGTCTCCTCCGTCGCCACACGGCTAA | 1227 | 49.96 | MDFSLNRFNNHHPQPRAAAVVDLMMMESSSSSPSPPLPPISSSSVFELEEATTAAVVGSRVQDSDNDHGIRIGIGSNCCSTDHAEKEHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLNSSTNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFERGVGELARDRLFIDWRRRPEHPPSLRHNLMQLPPHAHGQFSCRPSIVPAAAWSSLVWRPTGPYPPVPRDHMHLSPLNNNSTIDWSNSYGRSGGYSYGYGSVVKPESAESAVYYLRSGMEDGRGGGVSPQLVEGQEIGMLRQRQIPTSDDRGGGGGGDGAVIYESMPMVVQGNLRTPKRSRLRLFGVNMECPISSAASSDECDLFLSSSNHTTPAISSSTTQFPPPSPPSPHG | 408 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 4302873 | 4304099 | - | evm.model.ptg000001l.612 | HCH5g0612 | 544764 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g0612 | 408 | ProSiteProfiles | B3 DNA-binding domain profile. | 90 | 195 | IPR003340 | GO:0003677(InterPro) | |
| HCH5g0612 | 408 | SMART | B3_2 | 90 | 195 | IPR003340 | GO:0003677(InterPro) | |
| HCH5g0612 | 408 | FunFam | B3 domain-containing protein | 83 | 204 | - | - | |
| HCH5g0612 | 408 | CDD | B3_DNA | 88 | 177 | IPR003340 | GO:0003677(InterPro) | |
| HCH5g0612 | 408 | MobiDBLite | consensus disorder prediction | 381 | 408 | - | - | |
| HCH5g0612 | 408 | Gene3D | - | 83 | 204 | IPR015300 | - | |
| HCH5g0612 | 408 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 81 | 364 | IPR044800 | GO:0003700(InterPro) | |
| HCH5g0612 | 408 | SUPERFAMILY | DNA-binding pseudobarrel domain | 86 | 196 | IPR015300 | - | |
| HCH5g0612 | 408 | MobiDBLite | consensus disorder prediction | 381 | 395 | - | - | |
| HCH5g0612 | 408 | Pfam | B3 DNA binding domain | 90 | 194 | IPR003340 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0442 | HCH-Chr11:4388270 | HCH5g0612 | HCH-Chr5:4302873 | 6.90E-42 | dispersed | |
| HCH5g0612 | HCH-Chr5:4302873 | HCH7g1801 | HCH-Chr7:49546770 | 1.40E-35 | dispersed | |
| HCH5g0612 | HCH-Chr5:4302873 | HCH1g0802 | HCH-Chr1:56706788 | 2.10E-39 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33612 | PF02362 | B3 | 5.70E-29 | CL0405 | HCH | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH5g0612 | K09287 | - | csv:101211271 | 310.842 |