Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0615 ATGATGGAAGTGCAAAGTCATGATCACGGTCATATAATTGAAGTATGTGGAGATGTGCAAGCAGTAGGGACTAGTGTCGTTGGAAGTAAAATTTGTGGGGATGCACCGTGTGGGTTTTCTGATGCAAAAAACAGTTCGAAGGATGCCAAGGAACGATCTGCATCCATGCGGAAGCTTTGCATAGCAGTTGTACTGTGTGTTGTTTTTATGAGTGTAGAAGTAGTTGGAGGTATTAAAGCAAACAGTCTTGCAATTTTAACAGATGCTGCTCATTTGTTGTCGGATGTTGCTGCTTTTGCCATTTCTTTGTTCTCACTCTGGGCTTCAGGCTGGGAAGCAACTCCACGTCAGTCATATGGATTCTTCCGGATTGAAATACTTGGCGCTCTTGTTTCTATTCAGATGATATGGCTTCTTGCTGGAATTCTTGTTTACGAAGCTATTGCCAGACTTATCAATGGTCCAGGTGAAGTTAAGGGGTTGCTCATGTTTGTTGTTTCTGCATTTGGGCTAGTTGTCAACATTGCCATGGCTCTTCTGCTTGGTCATGATCATGGTCATGGTCATGGTCACAGTCATGGACATGGTGAGCACAATCATGGACATGGTGGTCACGAACACGGTCACGATCATCATGGGATAAGTGTCACCACACACCACCACCATCACCACCACCACGCAGAGGAAGACACCGACCATGGTGATAAGCATGATCATGCTCACCAGGAAGATGCAACCACACCCTTGATTGGGAGTATCCGTGATGATGAGAATAATTCATCAAAAGGTACAGAGAAACCGAAAAAACAACGAAACATAAACTTACAGGGGGCCTATCTCCATGTACTGGGGGATTCCATCCAAAGCATTGGCGTGATGATCGGTGGGGCAATTATATGGTATTATCCAGAGTATAAGATTCTTGATCTGATATGCACCCTCATTTTCTCCGCCATTGTTCTTTTCACAACGATTCAAATGCTTCGGAACATCCTTGAGGTTCTGATGGAGAGCACGCCCCGAGAAATCGATGCCACAAAGCTCGAGAAGGGTCTGTGCGAGATGGACGAGGTAGTTGCGATCCATGAACTACACATTTGGGCCATAACTGTTGGGAAAGTTCTGTTGGCTTGCCATGTTATAATAAAGCCAGAGGCTAATGCAGACATGGTTCTGGACAAGGTTATAGACTATATAAGGAGAGAGTACAACATCAGTCATGTCACTATTCAGATAGAGCGCCAGTAG 1248 44.79 MMEVQSHDHGHIIEVCGDVQAVGTSVVGSKICGDAPCGFSDAKNSSKDAKERSASMRKLCIAVVLCVVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIARLINGPGEVKGLLMFVVSAFGLVVNIAMALLLGHDHGHGHGHSHGHGEHNHGHGGHEHGHDHHGISVTTHHHHHHHHAEEDTDHGDKHDHAHQEDATTPLIGSIRDDENNSSKGTEKPKKQRNINLQGAYLHVLGDSIQSIGVMIGGAIIWYYPEYKILDLICTLIFSAIVLFTTIQMLRNILEVLMESTPREIDATKLEKGLCEMDEVVAIHELHIWAITVGKVLLACHVIIKPEANADMVLDKVIDYIRREYNISHVTIQIERQ 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4331461 4334569 - evm.model.ptg000001l.615 HCH5g0615 544767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0615 415 Gene3D Cation efflux protein transmembrane domain 55 335 IPR027469 -
HCH5g0615 415 MobiDBLite consensus disorder prediction 186 270 - -
HCH5g0615 415 MobiDBLite consensus disorder prediction 186 213 - -
HCH5g0615 415 SUPERFAMILY Cation efflux protein transmembrane domain-like 53 337 IPR027469 -
HCH5g0615 415 MobiDBLite consensus disorder prediction 223 244 - -
HCH5g0615 415 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 342 413 IPR036837 -
HCH5g0615 415 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 26 414 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
HCH5g0615 415 Pfam Cation efflux family 60 336 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0615 415 NCBIfam cation diffusion facilitator family transporter 56 415 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1401 HCH-Chr3:51956714 HCH5g0615 HCH-Chr5:4331461 1.00E-80 dispersed
HCH5g0615 HCH-Chr5:4331461 HCH9g0181 HCH-Chr9:1071069 5.00E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0615 K14689 - csv:101213602 611.298