Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0644 ATGGGTTGCGGTTCGGATTCGAAGTTGAGTAATTTTGTGGATGAAGATCGTGATTTTGTCGAGAAAGATCCAACGGGACGATACATACGGTACGCTGAACTTTTGGGGAAAGGAGCATTTAAGACAGTATACAGAGGATTTGATGAAGTTAATGGAATAGAAGTTGCTTGGAGCCAAGTGGATATCGAAGATGTTTTGGAGTCACCGGAACAACTTCAAAGATTATACTCTGAGGTTCATCTGCTGAAATCACTAAAACATGAAAATATCATCAAGCTGTACAACTATTGGGTTGATGATAGTAGTAAGACTATCAACATGATTACGGAGTTGTTCACTTCTGGGAGCTTGAGACAATACCGAAGGAAGCACAAGAAGATTGACCTTAAGGCTTTCAAGAACTGGGCGAGACAGATACTTCGGGGTTTAAGCTATCTGCATAGTCACAATCCCCCAATTATCCACAGGGATTTGAAATGCGATAATATATTTGTTAATGGCAACACTGGACAAGTTAAAATTGGAGATCTTGGATTGGCAATTGTCATGCAGCAGCCTACCGCTCGAAGTGTTATTGGCACTCCAGAGTTCATGGCTCCAGAGCTTTATGATGAGGAATACAATGAGCTTGTTGACATATATTCTTTTGGCATGAGCATGTTAGAAGTTGTTACTTGTGAATACCCGTATAGTGAGTGCAAAAATTCTGCTCAAATATACAAGAAGGTTACTTCTGGCATAAAGCCGTCCTCCCTTGACAAAGTGGCAGACCCTCTAGTTAAGCAGTTCATAGAGAAGTGTTTGGTTCCAGCATCCATGAGATTACCTGCAAGTGAACTCTTGAAAGATCCTTTCCTTGCAACTGAAAATCCCAAGGACCTCAGTTCCAATCCTTCTAGATTATTGAATCCTCAGTTTAACTTCAATTTCGTAATTCCTCAACTGCTGGATTCTCATCCAATGGACATAGACCCAAACTGCAGCAAACTCTCAGCCTCAGTGAGCTCATCTAATAAAAGCAGTAATGAAGTCTCTCACTTTTCAACTCTGGAACTTCAGAGGTTCACTGAGAGTGCCCGATTGACGATGAAAGGGGAGATGACTGACCATAATACAATTTCATTCTGTTTGCGCATTTCTGAACGATGTGGTAAAGCTACGGATATCAATTTTCCCTTTTATCTTGATACTGATACTGCTTCTGCAATTGCTAAGGAGATGGTTGAAGAACTTGTTCTGTCAAATGATAAAGCAATTATCATATCTAGGCTAATTGATGAACTACTGACGAAGTTTGTTCCCTCCTGGAAACTACGTACAAGTTATTGTCATGGAAAAAATACTGCAAACAGGAGTACTTCTGAAACTCTAGAGGATAAAACCTTTATTCCTCCTTTCTACTCTGAGCAAGTAGTGGCATCTTCCATGGTGGGTTCTGGGCCACCTCCATTGCATTCGACTGGGGTGAAAGATCAAGAAAACAAGCATTCTATTATTTCATGTGTATCTCTAGACTACGATCACTCCGATGCCTCGAATGACAGTGTTGGAAAAAGATCAGAATGTGATGACTGCAGCCGCCAGCAAAGTGGCAAAGCTTCAAGTGGTGATGTTATTGATTTGGATCCTGTTAGATCTGTTTCGATGATTGATTTCGCTAAACAGTCTCAAATTTCGACATGCTCCGGATTGTCAAAAGATGTTAGTTTTTCCAGTTTTTCCTCACTCTCTCTGGAAGAAAGAGATCACTACGATGAATTCAAGTCAGAGATTGATGCTATTGATCTGCAGTACCACCAGTGCCTTTGTGAACTATCAAGAATGAGAGAGGAAGCAATAGGAAATGTCAAAAAGAAGTGGATGTCAAAGATGAAAGCTTCTGCTGTTTGA 1890 40.58 MGCGSDSKLSNFVDEDRDFVEKDPTGRYIRYAELLGKGAFKTVYRGFDEVNGIEVAWSQVDIEDVLESPEQLQRLYSEVHLLKSLKHENIIKLYNYWVDDSSKTINMITELFTSGSLRQYRRKHKKIDLKAFKNWARQILRGLSYLHSHNPPIIHRDLKCDNIFVNGNTGQVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYDEEYNELVDIYSFGMSMLEVVTCEYPYSECKNSAQIYKKVTSGIKPSSLDKVADPLVKQFIEKCLVPASMRLPASELLKDPFLATENPKDLSSNPSRLLNPQFNFNFVIPQLLDSHPMDIDPNCSKLSASVSSSNKSSNEVSHFSTLELQRFTESARLTMKGEMTDHNTISFCLRISERCGKATDINFPFYLDTDTASAIAKEMVEELVLSNDKAIIISRLIDELLTKFVPSWKLRTSYCHGKNTANRSTSETLEDKTFIPPFYSEQVVASSMVGSGPPPLHSTGVKDQENKHSIISCVSLDYDHSDASNDSVGKRSECDDCSRQQSGKASSGDVIDLDPVRSVSMIDFAKQSQISTCSGLSKDVSFSSFSSLSLEERDHYDEFKSEIDAIDLQYHQCLCELSRMREEAIGNVKKKWMSKMKASAV 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4601707 4604527 - evm.model.ptg000001l.644 HCH5g0644 544796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0644 629 MobiDBLite consensus disorder prediction 512 539 - -
HCH5g0644 629 MobiDBLite consensus disorder prediction 512 526 - -
HCH5g0644 629 FunFam Probable serine/threonine-protein kinase WNK1 14 110 - -
HCH5g0644 629 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 15 532 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
HCH5g0644 629 SMART serkin_6 29 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0644 629 SUPERFAMILY Protein kinase-like (PK-like) 31 344 IPR011009 -
HCH5g0644 629 Gene3D - 371 463 - -
HCH5g0644 629 Gene3D Transferase(Phosphotransferase) domain 1 112 293 - -
HCH5g0644 629 CDD STKc_WNK 27 286 - -
HCH5g0644 629 ProSiteProfiles Protein kinase domain profile. 29 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0644 629 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 374 428 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
HCH5g0644 629 FunFam probable serine/threonine-protein kinase WNK9 112 291 - -
HCH5g0644 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g0644 629 Gene3D Phosphorylase Kinase; domain 1 12 110 - -
HCH5g0644 629 Pfam Protein kinase domain 32 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0644 HCH-Chr5:4601707 HCH7g1726 HCH-Chr7:49040484 9.50E-164 dispersed
HCH5g0644 HCH-Chr5:4601707 HCH10g0772 HCH-Chr10:7501607 5.80E-121 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81508 PF00069 Pkinase 2.00E-51 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0644 K08867 - csv:101207748 828.935