Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	HCH5g0652	ATGGCCTTCTTTCATTCCCATTCCCACATTCCTATTCTCACAATTCTCATTCTTTCCACCATGACCATTTCCTTATCTTTCCCAGATTCTGGCCCTGTTATTCCCGTTTCCAATCTCGTCAAATTCCTCGAACGTGTCCAAATCCTCGCCCTTAATTCCGCCGGAAAACTTGATTTTGATCTTAAATTCTACGTTGATTTATCACTTAAATTCGATTTGGCTTCCACGGAACGGGCATTTGATGCCTTGCAAAACACTGCTGTTAATGGCTCTGTTTCCTCTCAGGATTTTAAAAACTTTATCCGGAAGTTTTTTGAGAGTGCAGGGAGTGATTTGGTCTACTCCCAACCACTTGATTTTGTTCCTTTTCCTTTGGGATTCTTGCCCAAAGTGGAGAATTCGGAAGTCAGGAATTGGGCTTTGGAAATTCATCGTTTTTGGAAGAATCTTACTCGGAAAGCTTCTCTTGATGTTCATCATCGCCCCGATTTACATACTCTGCTTCCCTTGCCGGATTCTTGTGTCATTCCCGGATCAAGATTCCGGGAAGTTTATTACTGGGATTCGTATTGGGTTATCCGAGGCTTGCTGGCAAGTAAAATGTATGAGACTGCAAAGGGAATTGTAACCAATTTGATTTCGATGATAGATGAATATGGTTTTGTTCTGAATGGTGCCAGGGCTTATTACACTAACAGAAGTCAGCCTCCCCTCTTGAGTTCCATGGTTTATGATATATACCTTAGGACGAACGATATCGAATTCGTAAGGAATGCACTTCCTGCGTTGATCAAAGAGCATAAGTTTTGGAATTCAGGATTCCATTCGGTCAGCATCGAAAAAGTCCATGTTGGTCGAACTCATTATTTAAGTAGGTATTATGCTATGTGGAACGAACCCCGGCCTGAATCTTCAATAATGGATCAGAAACTTGCCTCCAAGTTCTCAAATAACTATGAAAAGCAGCATCTTTACCGAGAAGTGGCTTCAGCAGCTGAGTCAGGCTGGGATTTCAGTACAAGATGGATGAGGGATCCCTCGGATTTATCGACATTGGCAACAACTTCAATCTTGCCGGTTGATCTCAATGCATTTATACTCAAGATGGAACTTGACATCACTAAATTGGCAACAGCTACTGGTGATTTATGCACTGCAAAGCACTTTTTGAAGGCCTCTCTAATTAGAAAGAAAGCAATCAACTCAGTTTTTTGGAGTGCAGAGAAGGGACAGTGGCTTGATTACTGGCTAAACAATACTACTTACAAGGGAGCACAAACATGGGATTCTCAGAACCAGAATCAGAACATATTTGCTTCAAATTTCATTCCTTTGTGGATTGAGTCATTCTACTCAGATAATAGACAATTGAAGAAAGCCCTGAAAAGTTTACAGAACTCAGGCTTGCTTTGTAGTGCTGGGATTGCAACCTCAGTGACTAATTCAGGAGAACAATGGGACTTTCCGAATGGTTGGGCACCAATTCAGCACATGATTGTTGAAGGTCTGGTAAGATCAGGGTTGAGAGAAGCGAGGGAATTGGCGAAAGATATCGCCACGAGGTGGCTACGAACCAACTATGTAGCTTACAAGAAAACAGGTTTTATGCATGAGAAATATGATGTCCAAAAGTGTGGAGACTTCGGTGGAGGAGGAGAATATGTGCCTCAGACTGGTTTTGGGTGGTCAAATGGAGTTGTTTTGGCATTCCTTGAAGAGTTTGGATGGCCTGAAGATCAAAAGATAGACTGCTATTGA	1758	41.98	MAFFHSHSHIPILTILILSTMTISLSFPDSGPVIPVSNLVKFLERVQILALNSAGKLDFDLKFYVDLSLKFDLASTERAFDALQNTAVNGSVSSQDFKNFIRKFFESAGSDLVYSQPLDFVPFPLGFLPKVENSEVRNWALEIHRFWKNLTRKASLDVHHRPDLHTLLPLPDSCVIPGSRFREVYYWDSYWVIRGLLASKMYETAKGIVTNLISMIDEYGFVLNGARAYYTNRSQPPLLSSMVYDIYLRTNDIEFVRNALPALIKEHKFWNSGFHSVSIEKVHVGRTHYLSRYYAMWNEPRPESSIMDQKLASKFSNNYEKQHLYREVASAAESGWDFSTRWMRDPSDLSTLATTSILPVDLNAFILKMELDITKLATATGDLCTAKHFLKASLIRKKAINSVFWSAEKGQWLDYWLNNTTYKGAQTWDSQNQNQNIFASNFIPLWIESFYSDNRQLKKALKSLQNSGLLCSAGIATSVTNSGEQWDFPNGWAPIQHMIVEGLVRSGLREARELAKDIATRWLRTNYVAYKKTGFMHEKYDVQKCGDFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDQKIDCY	585

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
5	4698133	4701543	-	evm.model.ptg000001l.652	HCH5g0652	544804

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
HCH5g0652	585	PANTHER	TREHALASE	42	584	IPR001661	GO:0004555(PANTHER)\|GO:0004555(InterPro)\|GO:0005991(InterPro)\|GO:0005993(PANTHER)
HCH5g0652	585	Coils	Coil	447	467	-	-
HCH5g0652	585	Gene3D	-	41	583	IPR012341	GO:0005975(InterPro)
HCH5g0652	585	ProSitePatterns	Trehalase signature 2.	485	494	IPR018232	GO:0004555(InterPro)\|GO:0005991(InterPro)
HCH5g0652	585	PRINTS	Glycosyl hydrolase family 37 signature	325	342	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)
HCH5g0652	585	PRINTS	Glycosyl hydrolase family 37 signature	400	416	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)
HCH5g0652	585	PRINTS	Glycosyl hydrolase family 37 signature	219	237	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)
HCH5g0652	585	PRINTS	Glycosyl hydrolase family 37 signature	357	374	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)
HCH5g0652	585	PRINTS	Glycosyl hydrolase family 37 signature	478	494	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)
HCH5g0652	585	PRINTS	Glycosyl hydrolase family 37 signature	290	307	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)
HCH5g0652	585	PRINTS	Glycosyl hydrolase family 37 signature	558	571	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)
HCH5g0652	585	SUPERFAMILY	Six-hairpin glycosidases	53	577	IPR008928	GO:0005975(InterPro)
HCH5g0652	585	Pfam	Trehalase	57	575	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	HCH5g0652	K01194	-	-	csv:101208719	929.858

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
HCH5g0652	.	29	583	Trehalose Biosynthesis Gene Families	AT4G24040	57.3	7.4e-193	670.6
HCH7g0126	.	1	853	Trehalose Biosynthesis Gene Families	AT1G06410	76.7	0.0e+00	1372.8
HCH14g1006	.	1	845	Trehalose Biosynthesis Gene Families	AT1G06410	75.7	0.0e+00	1360.5
HCH6g1128	.	1	841	Trehalose Biosynthesis Gene Families	AT1G06410	66.6	0.0e+00	1144.0
HCH1g0188	.	1	840	Trehalose Biosynthesis Gene Families	AT1G06410	63.8	0.0e+00	1115.1
HCH1g1015	.	1	842	Trehalose Biosynthesis Gene Families	AT1G06410	62.4	0.0e+00	1083.6
HCH8g1373	.	1	842	Trehalose Biosynthesis Gene Families	AT1G06410	60.0	2.5e-308	1054.7
HCH3g0746	.	115	723	Trehalose Biosynthesis Gene Families	AT1G16980	64.8	4.4e-244	840.9
HCH12g0986	.	83	694	Trehalose Biosynthesis Gene Families	AT1G16980	65.3	8.3e-243	836.6
HCH1g1015	.	1	860	Trehalose Biosynthesis Gene Families	AT1G23870	74.6	0.0e+00	1349.7
HCH8g1373	.	1	860	Trehalose Biosynthesis Gene Families	AT1G23870	66.4	0.0e+00	1223.4
HCH1g0188	.	1	851	Trehalose Biosynthesis Gene Families	AT1G23870	62.7	0.0e+00	1116.3
HCH14g1006	.	1	846	Trehalose Biosynthesis Gene Families	AT1G23870	61.7	0.0e+00	1111.3
HCH6g1128	.	1	839	Trehalose Biosynthesis Gene Families	AT1G23870	62.8	0.0e+00	1101.7
HCH7g0126	.	1	854	Trehalose Biosynthesis Gene Families	AT1G23870	60.1	0.0e+00	1096.6
HCH1g1015	.	1	860	Trehalose Biosynthesis Gene Families	AT1G60140	73.9	0.0e+00	1343.6
HCH8g1373	.	1	860	Trehalose Biosynthesis Gene Families	AT1G60140	65.9	0.0e+00	1211.4
HCH14g1006	.	1	841	Trehalose Biosynthesis Gene Families	AT1G60140	61.4	0.0e+00	1085.5
HCH1g0188	.	1	849	Trehalose Biosynthesis Gene Families	AT1G60140	61.9	0.0e+00	1082.4
HCH6g1128	.	1	838	Trehalose Biosynthesis Gene Families	AT1G60140	60.2	1.3e-312	1068.9
HCH7g0126	.	1	845	Trehalose Biosynthesis Gene Families	AT1G60140	59.2	1.6e-310	1062.0
HCH1g0188	.	1	845	Trehalose Biosynthesis Gene Families	AT1G68020	80.7	0.0e+00	1411.0
HCH6g1128	.	1	842	Trehalose Biosynthesis Gene Families	AT1G68020	71.6	0.0e+00	1275.8
HCH14g1006	.	1	846	Trehalose Biosynthesis Gene Families	AT1G68020	63.6	0.0e+00	1155.6
HCH7g0126	.	1	844	Trehalose Biosynthesis Gene Families	AT1G68020	62.6	0.0e+00	1137.9
HCH1g1015	.	1	840	Trehalose Biosynthesis Gene Families	AT1G68020	63.6	0.0e+00	1114.8
HCH8g1373	.	1	844	Trehalose Biosynthesis Gene Families	AT1G68020	62.8	0.0e+00	1106.3
HCH1g1015	.	1	860	Trehalose Biosynthesis Gene Families	AT1G70290	67.9	0.0e+00	1192.6
HCH8g1373	.	1	857	Trehalose Biosynthesis Gene Families	AT1G70290	61.7	0.0e+00	1099.0
HCH14g1006	.	1	849	Trehalose Biosynthesis Gene Families	AT1G70290	57.2	4.4e-294	1007.3
HCH7g0126	.	1	852	Trehalose Biosynthesis Gene Families	AT1G70290	57.0	5.3e-292	1000.3
HCH1g0188	.	1	851	Trehalose Biosynthesis Gene Families	AT1G70290	57.5	4.5e-291	997.3
HCH6g1128	.	1	850	Trehalose Biosynthesis Gene Families	AT1G70290	56.5	2.2e-285	978.4
HCH12g0986	.	1	919	Trehalose Biosynthesis Gene Families	AT1G78580	78.6	0.0e+00	1468.8
HCH3g0746	.	29	953	Trehalose Biosynthesis Gene Families	AT1G78580	73.5	0.0e+00	1372.1
HCH1g1015	.	33	842	Trehalose Biosynthesis Gene Families	AT2G18700	61.7	3.9e-309	1057.4
HCH6g1128	.	26	839	Trehalose Biosynthesis Gene Families	AT2G18700	60.5	1.5e-300	1028.9
HCH8g1373	.	10	842	Trehalose Biosynthesis Gene Families	AT2G18700	58.9	8.9e-298	1019.6
HCH14g1006	.	1	844	Trehalose Biosynthesis Gene Families	AT2G18700	58.7	1.2e-297	1019.2
HCH7g0126	.	24	841	Trehalose Biosynthesis Gene Families	AT2G18700	58.3	2.7e-294	1008.1
HCH1g0188	.	1	840	Trehalose Biosynthesis Gene Families	AT2G18700	58.0	1.5e-289	992.3
HCH6g1128	.	1	836	Trehalose Biosynthesis Gene Families	AT4G17770	81.2	0.0e+00	1397.5
HCH1g0188	.	1	838	Trehalose Biosynthesis Gene Families	AT4G17770	71.0	0.0e+00	1252.7
HCH14g1006	.	1	838	Trehalose Biosynthesis Gene Families	AT4G17770	67.4	0.0e+00	1182.2
HCH7g0126	.	1	849	Trehalose Biosynthesis Gene Families	AT4G17770	63.3	0.0e+00	1161.4
HCH1g1015	.	1	842	Trehalose Biosynthesis Gene Families	AT4G17770	63.7	0.0e+00	1134.8
HCH8g1373	.	1	839	Trehalose Biosynthesis Gene Families	AT4G17770	62.9	0.0e+00	1115.1
HCH12g0986	.	91	917	Trehalose Biosynthesis Gene Families	AT4G27550	63.2	4.0e-305	1043.9
HCH3g0746	.	119	951	Trehalose Biosynthesis Gene Families	AT4G27550	59.2	3.9e-292	1000.7
HCH12g0986	.	1	919	Trehalose Biosynthesis Gene Families	AT1G78580	78.6	0.0e+00	1468.8
HCH3g0746	.	29	953	Trehalose Biosynthesis Gene Families	AT1G78580	73.5	0.0e+00	1372.1
HCH3g0746	.	115	723	Trehalose Biosynthesis Gene Families	AT1G16980	64.8	4.4e-244	840.9
HCH12g0986	.	83	694	Trehalose Biosynthesis Gene Families	AT1G16980	65.3	8.3e-243	836.6
HCH12g0986	.	91	612	Trehalose Biosynthesis Gene Families	AT1G17000	62.1	1.3e-191	666.8
HCH3g0746	.	120	638	Trehalose Biosynthesis Gene Families	AT1G17000	61.5	5.1e-191	664.8
HCH12g0986	.	91	917	Trehalose Biosynthesis Gene Families	AT4G27550	63.2	4.0e-305	1043.9
HCH3g0746	.	119	951	Trehalose Biosynthesis Gene Families	AT4G27550	59.2	3.9e-292	1000.7
HCH6g1128	.	1	836	Trehalose Biosynthesis Gene Families	AT4G17770	81.2	0.0e+00	1397.5
HCH1g0188	.	1	838	Trehalose Biosynthesis Gene Families	AT4G17770	71.0	0.0e+00	1252.7
HCH14g1006	.	1	838	Trehalose Biosynthesis Gene Families	AT4G17770	67.4	0.0e+00	1182.2
HCH7g0126	.	1	849	Trehalose Biosynthesis Gene Families	AT4G17770	63.3	0.0e+00	1161.4
HCH1g1015	.	1	842	Trehalose Biosynthesis Gene Families	AT4G17770	63.7	0.0e+00	1134.8
HCH8g1373	.	1	839	Trehalose Biosynthesis Gene Families	AT4G17770	62.9	0.0e+00	1115.1
HCH1g0188	.	1	845	Trehalose Biosynthesis Gene Families	AT1G68020	80.7	0.0e+00	1411.0
HCH6g1128	.	1	842	Trehalose Biosynthesis Gene Families	AT1G68020	71.6	0.0e+00	1275.8
HCH14g1006	.	1	846	Trehalose Biosynthesis Gene Families	AT1G68020	63.6	0.0e+00	1155.6
HCH7g0126	.	1	844	Trehalose Biosynthesis Gene Families	AT1G68020	62.6	0.0e+00	1137.9
HCH1g1015	.	1	840	Trehalose Biosynthesis Gene Families	AT1G68020	63.6	0.0e+00	1114.8
HCH8g1373	.	1	844	Trehalose Biosynthesis Gene Families	AT1G68020	62.8	0.0e+00	1106.3
HCH7g0126	.	1	853	Trehalose Biosynthesis Gene Families	AT1G06410	76.7	0.0e+00	1372.8
HCH14g1006	.	1	845	Trehalose Biosynthesis Gene Families	AT1G06410	75.7	0.0e+00	1360.5
HCH6g1128	.	1	841	Trehalose Biosynthesis Gene Families	AT1G06410	66.6	0.0e+00	1144.0
HCH1g0188	.	1	840	Trehalose Biosynthesis Gene Families	AT1G06410	63.8	0.0e+00	1115.1
HCH1g1015	.	1	842	Trehalose Biosynthesis Gene Families	AT1G06410	62.4	0.0e+00	1083.6
HCH8g1373	.	1	842	Trehalose Biosynthesis Gene Families	AT1G06410	60.0	2.5e-308	1054.7
HCH1g1015	.	1	860	Trehalose Biosynthesis Gene Families	AT1G70290	67.9	0.0e+00	1192.6
HCH8g1373	.	1	857	Trehalose Biosynthesis Gene Families	AT1G70290	61.7	0.0e+00	1099.0
HCH14g1006	.	1	849	Trehalose Biosynthesis Gene Families	AT1G70290	57.2	4.4e-294	1007.3
HCH7g0126	.	1	852	Trehalose Biosynthesis Gene Families	AT1G70290	57.0	5.3e-292	1000.3
HCH1g0188	.	1	851	Trehalose Biosynthesis Gene Families	AT1G70290	57.5	4.5e-291	997.3
HCH6g1128	.	1	850	Trehalose Biosynthesis Gene Families	AT1G70290	56.5	2.2e-285	978.4
HCH1g1015	.	1	860	Trehalose Biosynthesis Gene Families	AT1G23870	74.6	0.0e+00	1349.7
HCH8g1373	.	1	860	Trehalose Biosynthesis Gene Families	AT1G23870	66.4	0.0e+00	1223.4
HCH1g0188	.	1	851	Trehalose Biosynthesis Gene Families	AT1G23870	62.7	0.0e+00	1116.3
HCH14g1006	.	1	846	Trehalose Biosynthesis Gene Families	AT1G23870	61.7	0.0e+00	1111.3
HCH6g1128	.	1	839	Trehalose Biosynthesis Gene Families	AT1G23870	62.8	0.0e+00	1101.7
HCH7g0126	.	1	854	Trehalose Biosynthesis Gene Families	AT1G23870	60.1	0.0e+00	1096.6
HCH1g1015	.	1	860	Trehalose Biosynthesis Gene Families	AT1G60140	73.9	0.0e+00	1343.6
HCH8g1373	.	1	860	Trehalose Biosynthesis Gene Families	AT1G60140	65.9	0.0e+00	1211.4
HCH14g1006	.	1	841	Trehalose Biosynthesis Gene Families	AT1G60140	61.4	0.0e+00	1085.5
HCH1g0188	.	1	849	Trehalose Biosynthesis Gene Families	AT1G60140	61.9	0.0e+00	1082.4
HCH6g1128	.	1	838	Trehalose Biosynthesis Gene Families	AT1G60140	60.2	1.3e-312	1068.9
HCH7g0126	.	1	845	Trehalose Biosynthesis Gene Families	AT1G60140	59.2	1.6e-310	1062.0
HCH1g1015	.	33	842	Trehalose Biosynthesis Gene Families	AT2G18700	61.7	3.9e-309	1057.4
HCH6g1128	.	26	839	Trehalose Biosynthesis Gene Families	AT2G18700	60.5	1.5e-300	1028.9
HCH8g1373	.	10	842	Trehalose Biosynthesis Gene Families	AT2G18700	58.9	8.9e-298	1019.6
HCH14g1006	.	1	844	Trehalose Biosynthesis Gene Families	AT2G18700	58.7	1.2e-297	1019.2
HCH7g0126	.	24	841	Trehalose Biosynthesis Gene Families	AT2G18700	58.3	2.7e-294	1008.1
HCH1g0188	.	1	840	Trehalose Biosynthesis Gene Families	AT2G18700	58.0	1.5e-289	992.3
HCH5g0652	.	29	583	Trehalose Biosynthesis Gene Families	AT4G24040	57.3	7.4e-193	670.6

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0006557	1	3	1	1	1	1	2	2	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	2	1	2	1	38