Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0663 ATGGCTTATCATGGAGGAGATTCATACACAAAATCTTGTCTTACAGCTCAAAGTTGTGGAAGAGATGATCTTTATATGGAGCTATGGAGAGCTTGTGCTGGTCCATTGGTTGATTTACCTTGTGTTGGCGAGAGAGTCTTTTATTTTCCACAGGGACATATGGAACAATTAGAGGCATCAACAAATTTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTGTCGCCGAAGATTCTCTGTCGTGTGATTCATATTGAACCGCTGGCAGACCATGAAACGGATGAGGTTTATGCGCAAATAACTTTAATGCCCGATTCGGATCAAAAGGAGCCAACAAGTCCTGATCCATGTCCTCCTGAACCTGCCAGACCAGTTGTTCACCCGTTCTGTAAGGTTTTAACTGCTTCAGATACCAGCACTCATGGTGGGTTTTCTGTTCTTCGAAAACATGCGACCGAGTGTCTACCTCCTTTGGACATGACTCAGCCCACCCCAACTCAAGATCTGGTAGCCAAGGATCTTCATGGTTATGAGTGGCGATTTAAGCATATTTTCAGAGGTCAACCACGAAGACACCTGCTAACAACTGGGTGGAGTACATTTGTTACTTCTAAGCGATTAGTTGCAGGGGATTCCTTTGTATTCTTGAGGGGAGACAATGGGGAGTTGCGCGTTGGGGTGAGGCGTCTTTCTAGGCAGCAAAGCACCATGCCATCGTCTGTGATTTCAGGTCAGAGCATGCACCTAGGGGTGCTCGCAACTGCATCGCATGCTGTTACAACTCAAACCCGCTTTGTGGTCTATTATAAACCAAGGACGTGTCAGTTCATCATAAGTCTGAATAAATACTTAGAAGCGGTGAACAATAAATTTTCTGTTGGCATGAGATTCAATATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGTTGAAGATATTTCACCTCATTGGCATAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAACTTGCATCTATTCCAAGACCTGAGAAGGTATCACCGTGGGATATAGAACCACTCACGTCTTCAGCAATCACAAATCTATCTCACCCTGTAGGAAAAAACAAAAGGCCTCGACAGCCAATTGAAACTGCAGCTCTTGATGGTTCTGATTTAGCTAAACCAGCACTTTGGGATTCTAGATTGGTACAGTCTCATGATAGCAAACAATTCAATAATACAGCTGAGAGCAGAAAAGATGACAGTAATGATGTAAATCATCCTATAGAGAGAGATAGTATCAGCAATAGCACATCTGTATCTAGGACGCAGACTGATGGGACCTGGCTACCTTCTGGGCATCCCAATAATTATAAACATCCAGTAAAAGACCTGGTGCAGGACTGTAAAACTGTCTCCAGTTGTGGTTGGCCTTTTTTATCAGGACATTCAACCCCTCATTTGCTGAATTCAAGTGATGATCCAATACTTGAGCCCACTGACAATGGGAGGAAAGCTGAGACAACAACTAGTTGTAGATTGTTTGGTATTGACCTCAATCATTTGATACCTCCTGCAGAGAAGGCATCGTCTCAACCAACCAGTCTGTCTAGTGACTCTGAAGGACGCATCAGTACCCTGTCAGTGGCTCAGTCTGACCCAAAATTTGATAACTTGGAGGCTTCTATCGAAAGAAAAACAGAACCATCACAAGTATCTCTGAAGGAGGCTCAAAGCAATCTGAGTAGCTCAACTAACCCCAGAAGCCGCACCAAGGTTCACATGCACGGAGTAGCTGTGGGTAGGGCAGTGGACTTAATCATCTTGGAAGGCTATGACCAACTTATTGAAGAACTTGAGAAGATGTTTGATGTCAGGGGTCAATTGTGTGCTCGAGATAAGTGGGAGATTGTGTATACTGATGATGAAGGGGATATAATGCTTGTGGGAGATGACCCATGGCAAGAATTCTGTAACATGGTTAGAAGAATTTTTATATGCCCAAGGGAGGATGTGAAAAAGATAAGCTCAAGAAGCAAGCAGTCTTCAATAGAAGTGGAAGAGACTCTGCGGATGTCGGGTTGA 2076 43.64 MAYHGGDSYTKSCLTAQSCGRDDLYMELWRACAGPLVDLPCVGERVFYFPQGHMEQLEASTNLELNKRIPLFNLSPKILCRVIHIEPLADHETDEVYAQITLMPDSDQKEPTSPDPCPPEPARPVVHPFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQPTPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGDNGELRVGVRRLSRQQSTMPSSVISGQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGVEDISPHWHNSSWRSLRVQWDELASIPRPEKVSPWDIEPLTSSAITNLSHPVGKNKRPRQPIETAALDGSDLAKPALWDSRLVQSHDSKQFNNTAESRKDDSNDVNHPIERDSISNSTSVSRTQTDGTWLPSGHPNNYKHPVKDLVQDCKTVSSCGWPFLSGHSTPHLLNSSDDPILEPTDNGRKAETTTSCRLFGIDLNHLIPPAEKASSQPTSLSSDSEGRISTLSVAQSDPKFDNLEASIERKTEPSQVSLKEAQSNLSSSTNPRSRTKVHMHGVAVGRAVDLIILEGYDQLIEELEKMFDVRGQLCARDKWEIVYTDDEGDIMLVGDDPWQEFCNMVRRIFICPREDVKKISSRSKQSSIEVEETLRMSG 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4792412 4797199 - evm.model.ptg000001l.663 HCH5g0663 544815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0663 691 MobiDBLite consensus disorder prediction 562 588 - -
HCH5g0663 691 MobiDBLite consensus disorder prediction 409 425 - -
HCH5g0663 691 Gene3D - 581 673 - -
HCH5g0663 691 Gene3D - 126 230 IPR015300 -
HCH5g0663 691 MobiDBLite consensus disorder prediction 522 548 - -
HCH5g0663 691 FunFam Auxin response factor 290 361 - -
HCH5g0663 691 Pfam Auxin response factor 255 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH5g0663 691 FunFam Auxin response factor 127 231 - -
HCH5g0663 691 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
HCH5g0663 691 CDD B3_DNA 129 229 IPR003340 GO:0003677(InterPro)
HCH5g0663 691 MobiDBLite consensus disorder prediction 560 588 - -
HCH5g0663 691 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
HCH5g0663 691 Pfam AUX/IAA family 573 621 IPR033389 -
HCH5g0663 691 Pfam AUX/IAA family 631 669 IPR033389 -
HCH5g0663 691 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 674 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH5g0663 691 SUPERFAMILY DNA-binding pseudobarrel domain 121 258 IPR015300 -
HCH5g0663 691 ProSiteProfiles PB1 domain profile. 585 677 IPR053793 -
HCH5g0663 691 MobiDBLite consensus disorder prediction 426 449 - -
HCH5g0663 691 SUPERFAMILY CAD & PB1 domains 576 661 - -
HCH5g0663 691 MobiDBLite consensus disorder prediction 524 548 - -
HCH5g0663 691 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677(InterPro)
HCH5g0663 691 Gene3D - 290 363 - -
HCH5g0663 691 MobiDBLite consensus disorder prediction 400 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0834 HCH-Chr3:6324251 HCH5g0663 HCH-Chr5:4792412 4.80E-100 dispersed
HCH5g0663 HCH-Chr5:4792412 HCH6g1284 HCH-Chr6:47092980 4.40E-239 dispersed
HCH5g0663 HCH-Chr5:4792412 HCH14g1100 HCH-Chr14:37927991 5.60E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33616 PF02309 AUX_IAA 2.00E-12 CL0072 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0663 K14486 - csv:101209208 1100.12