Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0667 | ATGGCGGGGAAGAAAGAAGAAACTGATAAGAGTCTTATGTTGCTGCCATCCCCCTATCCAGTTGTAGCAGTCGCTATAAATGGGAAGAGAAACAGTAAATATGTAGTAAGATGGTCATTGGAAAAGTTTGTTCCTGAGGGCATCATTAATTTCAAGTTGTTGCACATCATGCCGAGAATTACTACTGTTCCAACTCCAAATTGCATATTCAAGCTATATGACAATGTTCATGCAGTGGGAAATTCAATTCCGCTTTCACAAGTTCGTGATGATGTTGCTGTGGCTTATAAGAAAGAAATAGAGTGGCAGACGAGTGAAAAACTTCTTCCATATAAGAAAATGTTTTCTCAGAAAAAGGTTCAAGTTGATGTTGTAACAATTGAAGCAGATGATGCGGCAAATGCAATAATAGAGGAGGTTACAAAGTGTGTAATCAGCAAGCTTGTTATAGGAGTTTCATCTCAGGGATTTTTCTCAAGGAAACTAGACGGTCTATCCTCGAGAATATCAGCACTAGCACCTAGAAATTGTACAGTCTATGCTGTTTCAAAAGGAAAATTAGCCTCCATACGGCCACCTGATATGGAGACAAATGTGAGCTGCATAGATGATGCGAGTGAAGTGCATTCTGCAAACAGTTCCTCAAGCTTTACTTCTAGCTCTCCTACAGATGGTGGCTCTGGCTCAAGCTCAATTACTTCATACTCACGTTTTCATTCTCCTTCCCCTTCCCTACCGTTACAACGATTTCAAGCTCTTTCAACCATCAATCAGCCTCTTCTCAAGGTGAAAGCAAGCTCCATTGAAGCCGACCATTCCAGAAGTCAGTCCCTTGATATTGAGGAGCAGATGGATGGCTTTAATTCATCTCCCAATGTTTCAGATTCTGGACAAACATTGAGTCGGGCCTCTAGTTTGAAAAGCTTGCCAACAGATAGTGAGTCTTTGGTTTCTGATCAAGCTTCCTCTTCAGGAGTGCTCAATGATTATTCTTCATGTGAAAGTCAGACGGATGTCAACTTTGAGCTTGAAAAGTTGAGAACTGAACTTAGACATGCGAGAGGAATGTATGCAATTGCTCAAAGAGAAACTATCGATGCTTCCCGAAAGCTGAACCACATAAATGTACAACGATTGGAGGGAGCTAGGAAGCTCGAGGAGATCAGAACTAAAGAGAAGAGTGCCAAAGAATTAGGTAGGCAAGAGAAAGAAAAGCATGAACTTCTGAGAAGAGAAGCCATGCATGTCAAAGAACGTGCTGAAAGAGAGGCAATGCAAAGGAAGGAAGCAGAGTTGAAAGCTCATCAAGATGCCAAAGAGAAAGAAAAGCATGAGAGCGCTCTTCAAGGACCTCTGCAAAAATACCGATATTTTCAGTGGGAAGAGATTGTATCCGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGTATGGGAGCATATGGAACCGTTTATAAGTGCAATTTGCATCATACAACAGTTGCGGTGAAGGTTCTCCACTCTAGAGATGGTCACAAAAATGTGCAATTTCTTCAAGAGCTTGAAGTATTGAGCAAAATTCATCATCCCCATCTTCTCCTCCTCCTTGGTGCATGTCCAGATCACGGTTGCCTGGTTTACGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTGTTCCGGAGAAGCAATACACCTGCAATCCCTTGGTATGACAGGTATCGAATTGCTTGGGAAATAGCCTCTTCTCTTGTCTTTCTGCACGGCTCAAAGCCAAAACCGATAATACATCGTGATCTCAAGCCAGGAAACATCTTACTTGACCAAAACCTTGTGAGTAAAATTGGCGATGTGGGTCTTTCTACAATGCTTAACTCAGACCCTTCTATGTCTACCGCATTCATGGACAGTGGACCAGTTGGAACTCTTTGTTACATAGATCCCGAGTATCAAAGGTCCGGATTAGTCTCACCTAAATCTGACGTGTATGCTTTTGGAATGGTGATCTTGCAGTTATTAACTGCAAAACCAGTAGTAGCACTTACGCGTTTGGTAGAAACAGCCATTAATGACCATACTTTGATAAAGATTTTGGATACGGAGGCTGGGAATTGGCCTGTCGAAGAGGCGTATGAATTGGCAAGACTAGGACTTCGCTGTGCAGAGCTGCAACGTAAAGATAGGCCTGACTTAAAGGATCAAGTAATTCCTTCATTGCTGAGATTGAAAGAGGCTGCTGATGGGGCTCACAATTCAGCCTCTAAAGTTCCGGCTTCTATTCCTAACCATTTCATCTGCCCTATTCTTAAGGACGTGATGAATGACCCTTGCGTTGCGGCGGATGGATACACATACGACCGTAGGGCAATAGAAAAGTGGCTTCAAGAGAATGACAAGTCTCCAATGACAAATTTGCCACTGCCAAATAAGAACTTAATACCAAATTATAATCTTCTTTCTGCAATTGTTGAGTGGAACTCCAGAAAAAACTAA | 2472 | 42.19 | MAGKKEETDKSLMLLPSPYPVVAVAINGKRNSKYVVRWSLEKFVPEGIINFKLLHIMPRITTVPTPNCIFKLYDNVHAVGNSIPLSQVRDDVAVAYKKEIEWQTSEKLLPYKKMFSQKKVQVDVVTIEADDAANAIIEEVTKCVISKLVIGVSSQGFFSRKLDGLSSRISALAPRNCTVYAVSKGKLASIRPPDMETNVSCIDDASEVHSANSSSSFTSSSPTDGGSGSSSITSYSRFHSPSPSLPLQRFQALSTINQPLLKVKASSIEADHSRSQSLDIEEQMDGFNSSPNVSDSGQTLSRASSLKSLPTDSESLVSDQASSSGVLNDYSSCESQTDVNFELEKLRTELRHARGMYAIAQRETIDASRKLNHINVQRLEGARKLEEIRTKEKSAKELGRQEKEKHELLRREAMHVKERAEREAMQRKEAELKAHQDAKEKEKHESALQGPLQKYRYFQWEEIVSATSSFSEDLKIGMGAYGTVYKCNLHHTTVAVKVLHSRDGHKNVQFLQELEVLSKIHHPHLLLLLGACPDHGCLVYEYMENGSLEDRLFRRSNTPAIPWYDRYRIAWEIASSLVFLHGSKPKPIIHRDLKPGNILLDQNLVSKIGDVGLSTMLNSDPSMSTAFMDSGPVGTLCYIDPEYQRSGLVSPKSDVYAFGMVILQLLTAKPVVALTRLVETAINDHTLIKILDTEAGNWPVEEAYELARLGLRCAELQRKDRPDLKDQVIPSLLRLKEAADGAHNSASKVPASIPNHFICPILKDVMNDPCVAADGYTYDRRAIEKWLQENDKSPMTNLPLPNKNLIPNYNLLSAIVEWNSRKN | 823 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4825162 | 4832102 | + | evm.model.ptg000001l.667 | HCH5g0667 | 544819 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0667 | 823 | ProSitePatterns | Protein kinases ATP-binding region signature. | 476 | 497 | IPR017441 | GO:0005524(InterPro) | |
HCH5g0667 | 823 | Pfam | Protein tyrosine and serine/threonine kinase | 475 | 726 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH5g0667 | 823 | Gene3D | HUPs | 13 | 186 | IPR014729 | - | |
HCH5g0667 | 823 | CDD | RING-Ubox_WDSUB1-like | 754 | 808 | - | - | |
HCH5g0667 | 823 | PANTHER | OS02G0152300 PROTEIN | 22 | 815 | IPR051348 | - | |
HCH5g0667 | 823 | CDD | STK_N | 21 | 185 | - | - | |
HCH5g0667 | 823 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 588 | 600 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH5g0667 | 823 | SMART | serkin_6 | 470 | 733 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH5g0667 | 823 | Pfam | U-box domain | 753 | 822 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
HCH5g0667 | 823 | MobiDBLite | consensus disorder prediction | 284 | 331 | - | - | |
HCH5g0667 | 823 | Gene3D | Phosphorylase Kinase; domain 1 | 416 | 542 | - | - | |
HCH5g0667 | 823 | Gene3D | Transferase(Phosphotransferase) domain 1 | 543 | 750 | - | - | |
HCH5g0667 | 823 | ProSiteProfiles | U-box domain profile. | 752 | 823 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
HCH5g0667 | 823 | ProSiteProfiles | Protein kinase domain profile. | 470 | 733 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH5g0667 | 823 | Coils | Coil | 343 | 363 | - | - | |
HCH5g0667 | 823 | SMART | Ubox_2 | 756 | 818 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
HCH5g0667 | 823 | SUPERFAMILY | RING/U-box | 742 | 821 | - | - | |
HCH5g0667 | 823 | MobiDBLite | consensus disorder prediction | 210 | 238 | - | - | |
HCH5g0667 | 823 | MobiDBLite | consensus disorder prediction | 420 | 447 | - | - | |
HCH5g0667 | 823 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 751 | 823 | IPR013083 | - | |
HCH5g0667 | 823 | Coils | Coil | 391 | 445 | - | - | |
HCH5g0667 | 823 | SUPERFAMILY | Protein kinase-like (PK-like) | 449 | 726 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g0667 | HCH-Chr5:4825162 | HCH7g0502 | HCH-Chr7:3775906 | 3.90E-101 | dispersed | |
HCH5g0667 | HCH-Chr5:4825162 | HCH10g0548 | HCH-Chr10:4428183 | 6.20E-123 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81509 | PF07714 | PK_Tyr_Ser-Thr | 2.00E-39 | CL0016 | HCH | PK |
Pathway information
