Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0667 ATGGCGGGGAAGAAAGAAGAAACTGATAAGAGTCTTATGTTGCTGCCATCCCCCTATCCAGTTGTAGCAGTCGCTATAAATGGGAAGAGAAACAGTAAATATGTAGTAAGATGGTCATTGGAAAAGTTTGTTCCTGAGGGCATCATTAATTTCAAGTTGTTGCACATCATGCCGAGAATTACTACTGTTCCAACTCCAAATTGCATATTCAAGCTATATGACAATGTTCATGCAGTGGGAAATTCAATTCCGCTTTCACAAGTTCGTGATGATGTTGCTGTGGCTTATAAGAAAGAAATAGAGTGGCAGACGAGTGAAAAACTTCTTCCATATAAGAAAATGTTTTCTCAGAAAAAGGTTCAAGTTGATGTTGTAACAATTGAAGCAGATGATGCGGCAAATGCAATAATAGAGGAGGTTACAAAGTGTGTAATCAGCAAGCTTGTTATAGGAGTTTCATCTCAGGGATTTTTCTCAAGGAAACTAGACGGTCTATCCTCGAGAATATCAGCACTAGCACCTAGAAATTGTACAGTCTATGCTGTTTCAAAAGGAAAATTAGCCTCCATACGGCCACCTGATATGGAGACAAATGTGAGCTGCATAGATGATGCGAGTGAAGTGCATTCTGCAAACAGTTCCTCAAGCTTTACTTCTAGCTCTCCTACAGATGGTGGCTCTGGCTCAAGCTCAATTACTTCATACTCACGTTTTCATTCTCCTTCCCCTTCCCTACCGTTACAACGATTTCAAGCTCTTTCAACCATCAATCAGCCTCTTCTCAAGGTGAAAGCAAGCTCCATTGAAGCCGACCATTCCAGAAGTCAGTCCCTTGATATTGAGGAGCAGATGGATGGCTTTAATTCATCTCCCAATGTTTCAGATTCTGGACAAACATTGAGTCGGGCCTCTAGTTTGAAAAGCTTGCCAACAGATAGTGAGTCTTTGGTTTCTGATCAAGCTTCCTCTTCAGGAGTGCTCAATGATTATTCTTCATGTGAAAGTCAGACGGATGTCAACTTTGAGCTTGAAAAGTTGAGAACTGAACTTAGACATGCGAGAGGAATGTATGCAATTGCTCAAAGAGAAACTATCGATGCTTCCCGAAAGCTGAACCACATAAATGTACAACGATTGGAGGGAGCTAGGAAGCTCGAGGAGATCAGAACTAAAGAGAAGAGTGCCAAAGAATTAGGTAGGCAAGAGAAAGAAAAGCATGAACTTCTGAGAAGAGAAGCCATGCATGTCAAAGAACGTGCTGAAAGAGAGGCAATGCAAAGGAAGGAAGCAGAGTTGAAAGCTCATCAAGATGCCAAAGAGAAAGAAAAGCATGAGAGCGCTCTTCAAGGACCTCTGCAAAAATACCGATATTTTCAGTGGGAAGAGATTGTATCCGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGTATGGGAGCATATGGAACCGTTTATAAGTGCAATTTGCATCATACAACAGTTGCGGTGAAGGTTCTCCACTCTAGAGATGGTCACAAAAATGTGCAATTTCTTCAAGAGCTTGAAGTATTGAGCAAAATTCATCATCCCCATCTTCTCCTCCTCCTTGGTGCATGTCCAGATCACGGTTGCCTGGTTTACGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTGTTCCGGAGAAGCAATACACCTGCAATCCCTTGGTATGACAGGTATCGAATTGCTTGGGAAATAGCCTCTTCTCTTGTCTTTCTGCACGGCTCAAAGCCAAAACCGATAATACATCGTGATCTCAAGCCAGGAAACATCTTACTTGACCAAAACCTTGTGAGTAAAATTGGCGATGTGGGTCTTTCTACAATGCTTAACTCAGACCCTTCTATGTCTACCGCATTCATGGACAGTGGACCAGTTGGAACTCTTTGTTACATAGATCCCGAGTATCAAAGGTCCGGATTAGTCTCACCTAAATCTGACGTGTATGCTTTTGGAATGGTGATCTTGCAGTTATTAACTGCAAAACCAGTAGTAGCACTTACGCGTTTGGTAGAAACAGCCATTAATGACCATACTTTGATAAAGATTTTGGATACGGAGGCTGGGAATTGGCCTGTCGAAGAGGCGTATGAATTGGCAAGACTAGGACTTCGCTGTGCAGAGCTGCAACGTAAAGATAGGCCTGACTTAAAGGATCAAGTAATTCCTTCATTGCTGAGATTGAAAGAGGCTGCTGATGGGGCTCACAATTCAGCCTCTAAAGTTCCGGCTTCTATTCCTAACCATTTCATCTGCCCTATTCTTAAGGACGTGATGAATGACCCTTGCGTTGCGGCGGATGGATACACATACGACCGTAGGGCAATAGAAAAGTGGCTTCAAGAGAATGACAAGTCTCCAATGACAAATTTGCCACTGCCAAATAAGAACTTAATACCAAATTATAATCTTCTTTCTGCAATTGTTGAGTGGAACTCCAGAAAAAACTAA 2472 42.19 MAGKKEETDKSLMLLPSPYPVVAVAINGKRNSKYVVRWSLEKFVPEGIINFKLLHIMPRITTVPTPNCIFKLYDNVHAVGNSIPLSQVRDDVAVAYKKEIEWQTSEKLLPYKKMFSQKKVQVDVVTIEADDAANAIIEEVTKCVISKLVIGVSSQGFFSRKLDGLSSRISALAPRNCTVYAVSKGKLASIRPPDMETNVSCIDDASEVHSANSSSSFTSSSPTDGGSGSSSITSYSRFHSPSPSLPLQRFQALSTINQPLLKVKASSIEADHSRSQSLDIEEQMDGFNSSPNVSDSGQTLSRASSLKSLPTDSESLVSDQASSSGVLNDYSSCESQTDVNFELEKLRTELRHARGMYAIAQRETIDASRKLNHINVQRLEGARKLEEIRTKEKSAKELGRQEKEKHELLRREAMHVKERAEREAMQRKEAELKAHQDAKEKEKHESALQGPLQKYRYFQWEEIVSATSSFSEDLKIGMGAYGTVYKCNLHHTTVAVKVLHSRDGHKNVQFLQELEVLSKIHHPHLLLLLGACPDHGCLVYEYMENGSLEDRLFRRSNTPAIPWYDRYRIAWEIASSLVFLHGSKPKPIIHRDLKPGNILLDQNLVSKIGDVGLSTMLNSDPSMSTAFMDSGPVGTLCYIDPEYQRSGLVSPKSDVYAFGMVILQLLTAKPVVALTRLVETAINDHTLIKILDTEAGNWPVEEAYELARLGLRCAELQRKDRPDLKDQVIPSLLRLKEAADGAHNSASKVPASIPNHFICPILKDVMNDPCVAADGYTYDRRAIEKWLQENDKSPMTNLPLPNKNLIPNYNLLSAIVEWNSRKN 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4825162 4832102 + evm.model.ptg000001l.667 HCH5g0667 544819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0667 823 ProSitePatterns Protein kinases ATP-binding region signature. 476 497 IPR017441 GO:0005524(InterPro)
HCH5g0667 823 Pfam Protein tyrosine and serine/threonine kinase 475 726 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g0667 823 Gene3D HUPs 13 186 IPR014729 -
HCH5g0667 823 CDD RING-Ubox_WDSUB1-like 754 808 - -
HCH5g0667 823 PANTHER OS02G0152300 PROTEIN 22 815 IPR051348 -
HCH5g0667 823 CDD STK_N 21 185 - -
HCH5g0667 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g0667 823 SMART serkin_6 470 733 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0667 823 Pfam U-box domain 753 822 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH5g0667 823 MobiDBLite consensus disorder prediction 284 331 - -
HCH5g0667 823 Gene3D Phosphorylase Kinase; domain 1 416 542 - -
HCH5g0667 823 Gene3D Transferase(Phosphotransferase) domain 1 543 750 - -
HCH5g0667 823 ProSiteProfiles U-box domain profile. 752 823 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH5g0667 823 ProSiteProfiles Protein kinase domain profile. 470 733 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0667 823 Coils Coil 343 363 - -
HCH5g0667 823 SMART Ubox_2 756 818 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH5g0667 823 SUPERFAMILY RING/U-box 742 821 - -
HCH5g0667 823 MobiDBLite consensus disorder prediction 210 238 - -
HCH5g0667 823 MobiDBLite consensus disorder prediction 420 447 - -
HCH5g0667 823 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 751 823 IPR013083 -
HCH5g0667 823 Coils Coil 391 445 - -
HCH5g0667 823 SUPERFAMILY Protein kinase-like (PK-like) 449 726 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0667 HCH-Chr5:4825162 HCH7g0502 HCH-Chr7:3775906 3.90E-101 dispersed
HCH5g0667 HCH-Chr5:4825162 HCH10g0548 HCH-Chr10:4428183 6.20E-123 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81509 PF07714 PK_Tyr_Ser-Thr 2.00E-39 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0667 - - - 0.0