Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0668 ATGCTCAAACTAATTCTTCTTGTGATTTCAGCCACAGTTTTCCTACTCGTTATTCTCTCGTTCATCATCTTCTTCCGCAAAAAATGCATGAAAAAAAGAGACGTGGAAAACTCAGAAAAGAAACAAGAAGAAGAAGAAGAAACGAAGAGAGAAGAGAGAATGATAACTTTTGAGGGTGGCGAGGAATTGACCATTGATGACATATTAGAAGCACCGGGGGAAGTAATCGGCAAATCCAACTACGGCACTTTGTATAAAGCTTTCTTACAAAGAAGCCGAAGAGCCACGCTTCTGCGATTTTTACGACCCGCGTTTTGTTCTAAGAATGATGAAGATTTTGATGACGCCATTCAGTTTCTGGGATTCGTTAAGCATCCAAATTTGGTGCCTCTCTTGGGATTCTATAATGGTCACAGAGGAGAGAAGCTTCTTGTTTATCAATTCTATACTCGTGGTAATCTTGCTGACTTTATTAGAGTAGGAAGTGCAGAATCACACAAATGGGGAATCATTTACAAAATCTCCCTTGGTATAGCCAAAGGGTTGGATCATCTTCACACTGGTTTGCAGAAACCAATGATTCATGGAAATCTAAAGTCCAAAAACATTCTTTTGGACAGAAATTATGAGCCCCATGTCTCAGATTTTGGCCTGCATCTCCTCTTGAATCCCACAGCAAGCCAAGAAATGCTTCAAGTTTCATCAGCTTGTGGCTACAAGGCACCTGAGCTCATCAAGATGAAAGATGCAAGTGCACAAACTGATATTTACAGCTATGGTGTGATCTTACTTGAGTTACTATCTGGTAAAGAGCCGATTAACGAAACACCGGCTCCTGATGAGGACATTCATCTCCCAAACTACGTACGAAACGCCATTCTCGACCATCGAATCGCAGATTTGTTCCATCCAGACATGCTCGTTAGCGACAGCAATAACGACGGTAGCAGCATTGTCACCAAAGAACAGCTTCTCAAATGCTTTCAGCTTGCCTTGGATTGTTGTTCTTCTTCCCCGGCTCTTCGACCGAGTATCAAGCAAGTAATCGCACAGCTTGAAGGAATCAGTACATAA 1074 41.9 MLKLILLVISATVFLLVILSFIIFFRKKCMKKRDVENSEKKQEEEEETKREERMITFEGGEELTIDDILEAPGEVIGKSNYGTLYKAFLQRSRRATLLRFLRPAFCSKNDEDFDDAIQFLGFVKHPNLVPLLGFYNGHRGEKLLVYQFYTRGNLADFIRVGSAESHKWGIIYKISLGIAKGLDHLHTGLQKPMIHGNLKSKNILLDRNYEPHVSDFGLHLLLNPTASQEMLQVSSACGYKAPELIKMKDASAQTDIYSYGVILLELLSGKEPINETPAPDEDIHLPNYVRNAILDHRIADLFHPDMLVSDSNNDGSSIVTKEQLLKCFQLALDCCSSSPALRPSIKQVIAQLEGIST 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4834704 4837015 - evm.model.ptg000001l.668 HCH5g0668 544820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0668 357 SUPERFAMILY Protein kinase-like (PK-like) 73 354 IPR011009 -
HCH5g0668 357 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 4 356 IPR052451 -
HCH5g0668 357 Gene3D Phosphorylase Kinase; domain 1 32 148 - -
HCH5g0668 357 Gene3D Transferase(Phosphotransferase) domain 1 150 357 - -
HCH5g0668 357 Coils Coil 26 52 - -
HCH5g0668 357 ProSiteProfiles Protein kinase domain profile. 70 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0668 357 Pfam Protein tyrosine and serine/threonine kinase 74 351 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0668 HCH-Chr5:4834704 HCH5g0978 HCH-Chr5:9097866 2.60E-57 dispersed
HCH11g1045 HCH-Chr11:42036758 HCH5g0668 HCH-Chr5:4834704 2.70E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81510 PF07714 PK_Tyr_Ser-Thr 3.20E-32 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0668 - - - 0.0