Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0675 ATGGCCTCTACTCAAGATTCATCAACTTTAGAACTCATTAGGCAACACCTCCTCAATGACTTTAACTCCATAGAAACCTTTACTACCAATCTTGACCACCTCTACAAAAATAAAAAACCTGAAACCAACTCCATGCAGCCATCTAAATCGGCTCCTCGTCGACCGTCGTTAAACGTATCGATTCCTCCCAAGAGCTACTCCGTTACACCGGTGGCGGTGGCGGCGGTTGATAGAGCTGAAGAATCTGATGTACCCTTGAGTCATAGTGAAAGTAAGCATTATAGAGGGGTCCGGCGGCGGCCGTGGGGGAAGTTTGCGGCGGAGATAAGAGACCCTAATAAGCGTGGAGCACGTGTTTGGCTTGGAACTTTTGATACGGCTATTGAAGCTGCTAAAGCTTACGATAAAGCTGCTTTTAGAATGAGAGGGAGTAAGGCTATATTGAATTTTCCTCTTGAGGCTGGAAAGGAAACGGAGCCGCTGCTGCCGGCGACGGAGATGGGTGGCCGGAAAAGGAGAAGGGAAAGTCATGAAAATGAAGAGGTTATTGAGTTTAAGGTGATGAAGAAGGAGGATTCATTGGAAAAGGAAATGATCAAGCAAGAGAATAATGGGGTTTCTTCCGGTGCCGTTTGTCCGTTAACGCCGTCATGTTGGGCGACGGTTTGGGATAGTGATGGGAAGGGAATATTCACTGTGCCTCCGTTATCGCCGTTATCTCCTTATCCTTTAATGGGATATTCACAACTTACGGTTGTATAA 762 46.59 MASTQDSSTLELIRQHLLNDFNSIETFTTNLDHLYKNKKPETNSMQPSKSAPRRPSLNVSIPPKSYSVTPVAVAAVDRAEESDVPLSHSESKHYRGVRRRPWGKFAAEIRDPNKRGARVWLGTFDTAIEAAKAYDKAAFRMRGSKAILNFPLEAGKETEPLLPATEMGGRKRRRESHENEEVIEFKVMKKEDSLEKEMIKQENNGVSSGAVCPLTPSCWATVWDSDGKGIFTVPPLSPLSPYPLMGYSQLTVV 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4884370 4885131 - evm.model.ptg000001l.675 HCH5g0675 544827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0675 253 CDD AP2 92 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0675 253 SMART rav1_2 93 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0675 253 SUPERFAMILY DNA-binding domain 93 152 IPR016177 GO:0003677(InterPro)
HCH5g0675 253 MobiDBLite consensus disorder prediction 37 62 - -
HCH5g0675 253 FunFam Ethylene-responsive transcription factor 2 92 153 - -
HCH5g0675 253 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0675 253 PANTHER DNA-BINDING DOMAIN 48 187 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
HCH5g0675 253 Gene3D AP2/ERF domain 92 153 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0675 253 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0675 253 PRINTS Ethylene responsive element binding protein signature 133 153 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0675 253 Pfam AP2 domain 93 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0675 253 MobiDBLite consensus disorder prediction 40 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0675 HCH-Chr5:4884370 HCH6g1042 HCH-Chr6:45136959 6.50E-47 dispersed
HCH5g0674 HCH-Chr5:4875229 HCH5g0675 HCH-Chr5:4884370 3.10E-30 tandem
HCH5g0675 HCH-Chr5:4884370 HCH5g0676 HCH-Chr5:4901637 3.80E-23 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33618 PF00847 AP2 5.50E-16 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0675 K09286 - csv:101221306 277.715