Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0676 | ATGAATGAATTCCATTCAAATTCTCTCCACGAATTCTCCGGCAATGAAACAACCTTAATTCCATCTTTGACGGAGCACTGGGGAGGTTTACCGTTTAAACTAAACGATTCCGAAGACATGATCGTTTACAGTTCTTTAAGCGACGCCGTCAATTTCGGTTGGTCTCCGATAGACTTCACTTTCACGGCGGACCTTTTTCCGGCTGCGAACAAGGAGCCGGTGACGTTGACAAAGAAGACCTGCCGGAATTTGAATCTGGGGTCGGCGAGAGGAAGACGTTACAGAGGGGTTAGGCGGCGTCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGATCCGGCGAAGAACGGGGCGCGGGTATGGCTTGGGACGTACGAGACGGATGAGGAAGCGGCTCTGGCTTATGATAGAGCGGCGTTTAAGCTGCGTGGCTCGAAGGCTTTGCTCAACTTTCCTCACATGATTGGCTCGAATGAGCCGGCTCCTGTGAGTATTGTGGCTAGACGGCGTAAGACCGAGCCTAGTTATGGCTCGACGGATGTGAGTTTGTCGGTGAACGGCGTGAGACTAATCCACGTGGAGAATTCTGCCAGCTGGCAAAGAGCTACTGGTTGTGTTATGATGAAAAATTTCTCCACTAGTGCTAGTTGTACTTGA | 654 | 51.38 | MNEFHSNSLHEFSGNETTLIPSLTEHWGGLPFKLNDSEDMIVYSSLSDAVNFGWSPIDFTFTADLFPAANKEPVTLTKKTCRNLNLGSARGRRYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAALAYDRAAFKLRGSKALLNFPHMIGSNEPAPVSIVARRRKTEPSYGSTDVSLSVNGVRLIHVENSASWQRATGCVMMKNFSTSASCT | 217 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4901637 | 4902290 | + | evm.model.ptg000001l.676 | HCH5g0676 | 544828 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0676 | 217 | CDD | AP2 | 101 | 152 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0676 | 217 | ProSiteProfiles | AP2/ERF domain profile. | 93 | 151 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0676 | 217 | Gene3D | AP2/ERF domain | 92 | 153 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0676 | 217 | SUPERFAMILY | DNA-binding domain | 93 | 152 | IPR016177 | GO:0003677(InterPro) | |
HCH5g0676 | 217 | PRINTS | Ethylene responsive element binding protein signature | 133 | 153 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0676 | 217 | PRINTS | Ethylene responsive element binding protein signature | 94 | 105 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0676 | 217 | SMART | rav1_2 | 93 | 157 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0676 | 217 | FunFam | Ethylene-responsive transcription factor 2 | 92 | 152 | - | - | |
HCH5g0676 | 217 | PANTHER | DNA-BINDING DOMAIN | 75 | 170 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
HCH5g0676 | 217 | Pfam | AP2 domain | 93 | 144 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g1039 | HCH-Chr11:41934957 | HCH5g0676 | HCH-Chr5:4901637 | 7.20E-37 | dispersed | |
HCH5g0674 | HCH-Chr5:4875229 | HCH5g0676 | HCH-Chr5:4901637 | 1.80E-25 | dispersed | |
HCH5g0676 | HCH-Chr5:4901637 | HCH6g1043 | HCH-Chr6:45154510 | 1.60E-41 | dispersed | |
HCH5g0675 | HCH-Chr5:4884370 | HCH5g0676 | HCH-Chr5:4901637 | 3.80E-23 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33619 | PF00847 | AP2 | 1.30E-15 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH5g0676 | K09286 | - | cit:102626847 | 189.504 |