Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0676 ATGAATGAATTCCATTCAAATTCTCTCCACGAATTCTCCGGCAATGAAACAACCTTAATTCCATCTTTGACGGAGCACTGGGGAGGTTTACCGTTTAAACTAAACGATTCCGAAGACATGATCGTTTACAGTTCTTTAAGCGACGCCGTCAATTTCGGTTGGTCTCCGATAGACTTCACTTTCACGGCGGACCTTTTTCCGGCTGCGAACAAGGAGCCGGTGACGTTGACAAAGAAGACCTGCCGGAATTTGAATCTGGGGTCGGCGAGAGGAAGACGTTACAGAGGGGTTAGGCGGCGTCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGATCCGGCGAAGAACGGGGCGCGGGTATGGCTTGGGACGTACGAGACGGATGAGGAAGCGGCTCTGGCTTATGATAGAGCGGCGTTTAAGCTGCGTGGCTCGAAGGCTTTGCTCAACTTTCCTCACATGATTGGCTCGAATGAGCCGGCTCCTGTGAGTATTGTGGCTAGACGGCGTAAGACCGAGCCTAGTTATGGCTCGACGGATGTGAGTTTGTCGGTGAACGGCGTGAGACTAATCCACGTGGAGAATTCTGCCAGCTGGCAAAGAGCTACTGGTTGTGTTATGATGAAAAATTTCTCCACTAGTGCTAGTTGTACTTGA 654 51.38 MNEFHSNSLHEFSGNETTLIPSLTEHWGGLPFKLNDSEDMIVYSSLSDAVNFGWSPIDFTFTADLFPAANKEPVTLTKKTCRNLNLGSARGRRYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAALAYDRAAFKLRGSKALLNFPHMIGSNEPAPVSIVARRRKTEPSYGSTDVSLSVNGVRLIHVENSASWQRATGCVMMKNFSTSASCT 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4901637 4902290 + evm.model.ptg000001l.676 HCH5g0676 544828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0676 217 CDD AP2 101 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0676 217 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0676 217 Gene3D AP2/ERF domain 92 153 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0676 217 SUPERFAMILY DNA-binding domain 93 152 IPR016177 GO:0003677(InterPro)
HCH5g0676 217 PRINTS Ethylene responsive element binding protein signature 133 153 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0676 217 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0676 217 SMART rav1_2 93 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0676 217 FunFam Ethylene-responsive transcription factor 2 92 152 - -
HCH5g0676 217 PANTHER DNA-BINDING DOMAIN 75 170 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
HCH5g0676 217 Pfam AP2 domain 93 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1039 HCH-Chr11:41934957 HCH5g0676 HCH-Chr5:4901637 7.20E-37 dispersed
HCH5g0674 HCH-Chr5:4875229 HCH5g0676 HCH-Chr5:4901637 1.80E-25 dispersed
HCH5g0676 HCH-Chr5:4901637 HCH6g1043 HCH-Chr6:45154510 1.60E-41 dispersed
HCH5g0675 HCH-Chr5:4884370 HCH5g0676 HCH-Chr5:4901637 3.80E-23 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33619 PF00847 AP2 1.30E-15 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0676 K09286 - cit:102626847 189.504