Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0698 ATGACAAGGAAGAAGGTAAAACTTGCATATATCACTAATGATTCTGCAAGAAAAGCAACATTCAAGAAAAGGAAGAGAGGTTTGATGAAGAAAGTGAGTGAACTCAGCACCCTTTGTGGGATTGAGGCTTGTGCTATCATATATAGTCCTTATGATTCTCAGCCTGAAGTTTGGCCTTCTGCTTTAGGAATCCAAAGAGTTCTGACTCAGTTCAAGAAGATGCCTGAGATGGAGCAAAGCAAGAAAATGGTGAATCAGGAGAGCTTTCTCAGGCAGAGGATTGCGAAAGCCGATGAACAACTCAAAAAACATCGAAAGGATAATCGAGAAAAGGAGATCACTCAAGTCATGTTCCAAAGCTTGATTGGAAAAGGCCTGCAAGGTTTGAACATGATGGATTTGAATGATCTTGGGTGGTTAATTGATCAAAACTTGAAGGATGTTACAAAAAGGATGGAAACACTTGAAAAAGAAGCAGCTCGGGATCGGGATCGGGATCGGAATCAGAATCAAGCTCAGGTTGTACCAATGCCATGTGATGAAGTTGATGGATTGAAAAGTGCAGAAAATATTGTGGAGATGAATCAGAATATGGAGAGCATGCAAAGGCAACCATGGTTCATGGAGTTGATGAATCCACAAGATCATCATGATCATAATATGGGCTTTGTTGCTGATGATATGATTTTGCCTTTTGCTGATCATAGCCATAATGCAATGTGGTCCAATGCCTTCTTCCCTTGA 744 40.59 MTRKKVKLAYITNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIIYSPYDSQPEVWPSALGIQRVLTQFKKMPEMEQSKKMVNQESFLRQRIAKADEQLKKHRKDNREKEITQVMFQSLIGKGLQGLNMMDLNDLGWLIDQNLKDVTKRMETLEKEAARDRDRDRNQNQAQVVPMPCDEVDGLKSAENIVEMNQNMESMQRQPWFMELMNPQDHHDHNMGFVADDMILPFADHSHNAMWSNAFFP 247
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 5053400 5054143 + evm.model.ptg000001l.698 HCH5g0698 544850
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0698 247 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH5g0698 247 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
HCH5g0698 247 Coils Coil 145 165 - -
HCH5g0698 247 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH5g0698 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH5g0698 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH5g0698 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH5g0698 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH5g0698 247 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH5g0698 247 FunFam agamous-like MADS-box protein AGL80 13 97 - -
HCH5g0698 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH5g0698 247 Coils Coil 87 114 - -
HCH5g0698 247 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0489 HCH-Chr11:5820298 HCH5g0698 HCH-Chr5:5053400 2.50E-34 dispersed
HCH3g0991 HCH-Chr3:10492469 HCH5g0698 HCH-Chr5:5053400 8.40E-84 dispersed
HCH5g0698 HCH-Chr5:5053400 HCH8g0017 HCH-Chr8:1021795 6.40E-108 dispersed
HCH5g0698 HCH-Chr5:5053400 HCH2g0254 HCH-Chr2:38619211 1.40E-09 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33620 PF00319 SRF-TF 1.30E-18 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0698 - - - 0.0