Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0711 ATGTCTTTCTTCAAAACAACAACGTTTGTGTTGTTTGTAGCAACGCTTCTGATTGGTCTGTCAAGAGCTCAGCTGAGCCCAACGTTCTACGATAACACATGCCCCAATGTATCTACCATTGTTCGTGAAGTCGTCTCTCAAGCTCTTCTTACTGATATCCGAGCTGGAGCTAAACTCATCCGTTTTCATTTCCACGATTGCTTCGTCAACGGTTGTGATGGATCCGTTTTGCTGGTAGATGCAGATGGCATAGACAGCGAGCTAAATGCACCGGGGAATCAAGGAATACAAGGACAGGAAATAATAGATAACATCAAAACAGCAGTGGAGAGTGCTTGCCCAGGCATCGTCTCTTGTGCTGATATCTTAGCTATTGCCTCCAATGTTTCTGTCGTCTTGCAAGGAGGAGAGCCATGGGAGGTTCAATTGGGAAGAAGAGATAGCAGGGAAGCTAACAGATCTGGAGCTACAAGTAACCTTCCAAGTCCTTTTGAACCCCTTGCTAATCTGACCGTCAAGTTTGCTGCTCTTGGTCTTGATTCTACTGATCTTGTTGTTCTATCCGGAGCACATACATTTGGACGTTCAAGATGTTTATTCTTCAGTGGACGTCTAATTAACTTCAATGAATCCGGACAACCAGATCCCACCTTAGATCCAGAGTACAGACAAGTTCTTCTACAAGAATGTCCTGAAGGAGGTGACAACAATCGTGTGAGTTTTGATCCTACGACTCCTGACAATTTCGACAACAATTACTACGTTAATCTTCAAGTGAATCGTGGTCTTCTAACAAGTGATCAAACCCTCTTCTCCACTGATGGTGCTGTCACTACTGCTATTGTGAATCGTTTTGCGAATAATCAAGCTGAATTTTTCATCAGCTTTGGTCAGTCTATGATTAACATGGGAAATCTCAGTCCTTTGACTGGAACTGATGGAGAAGTTAGATTGATCTGTTCAAGGGTTAATCCACTGTCAGCAATTGCTGATATGTAA 999 43.04 MSFFKTTTFVLFVATLLIGLSRAQLSPTFYDNTCPNVSTIVREVVSQALLTDIRAGAKLIRFHFHDCFVNGCDGSVLLVDADGIDSELNAPGNQGIQGQEIIDNIKTAVESACPGIVSCADILAIASNVSVVLQGGEPWEVQLGRRDSREANRSGATSNLPSPFEPLANLTVKFAALGLDSTDLVVLSGAHTFGRSRCLFFSGRLINFNESGQPDPTLDPEYRQVLLQECPEGGDNNRVSFDPTTPDNFDNNYYVNLQVNRGLLTSDQTLFSTDGAVTTAIVNRFANNQAEFFISFGQSMINMGNLSPLTGTDGEVRLICSRVNPLSAIADM 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5156946 5158984 + evm.model.ptg000001l.711 HCH5g0711 544863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0711 332 FunFam Peroxidase 161 303 - -
HCH5g0711 332 Pfam Peroxidase 41 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 Gene3D Peroxidase, domain 2 161 303 - -
HCH5g0711 332 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH5g0711 332 PANTHER PEROXIDASE 72-RELATED 11 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 FunFam Peroxidase 28 169 - -
HCH5g0711 332 SUPERFAMILY Heme-dependent peroxidases 24 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
HCH5g0711 332 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0711 332 Gene3D - 29 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1423 HCH-Chr2:55929710 HCH5g0711 HCH-Chr5:5156946 2.90E-108 dispersed
HCH2g1424 HCH-Chr2:55941354 HCH5g0711 HCH-Chr5:5156946 3.30E-115 dispersed
HCH5g0711 HCH-Chr5:5156946 HCH7g0118 HCH-Chr7:769221 5.70E-67 dispersed
HCH5g0711 HCH-Chr5:5156946 HCH5g0712 HCH-Chr5:5165344 1.40E-145 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0711 K00430 - csv:101215530 466.848