Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0712 ATGTCGTTTTTAAAAGCAATAATCGCTTTCGTTATCGTGACGAGCACGCTCCTGATTGCTCCATCAAGAGCTCAGCTGAGCCCAACGTTCTATGCCACCACATGCCCCAACGTTTCCGCCATTGTTAAAGAAATGGTTTCTCAAGCTCTGGTAACCAATGCTCGAGCTGGAGCCCAACTCATTCGTTTTCATTTCCATGATTGCTTCGTTAATGGGTGTGACGGGTCCGTGTTACTGGAAGATGCAGAAGGAATAGAGAGTGAGCAAAATGCACAAGGAAATGAAGGGATACAGGGTCAAGATATCGTTGCAAACATCAAAACAGCAGTGGAGAATGCTTGCCCACAAGTGGTTTCATGTGCTGATATCTTAGCCATTGCTTCTAATGCATCTGTGTCCTTGGCAAGGGGGCAGGGGTGGGAGGTATTATTGGGAAGAAGAGATAGCATAATAGCAAATGTATCTGGAGCAAGAAGTAACCTTCCAAGTCCTTTTGAGCCACTTCAAAATCTTACTGTCAAGTTTGCCGCTGTCGGTCTTGATTCTACTGATCTTGTAGTTTTATCTGGAGCACATACCTTTGGGCGTTCAAGATGTAGATTTTTCAGTGGGCGTCTCAACAACTTCAATGGAACCGGAGCCCCGGATCCGACCCTAGACTCGACATATCGAGAAGTACTTCTACAAGCATGTCCAGAAGGGGGTGATAACAATCGGGTCAATCTTGACCCGACCACTCCTGATGAATTTGACAAAAACTACTACACAAATCTTCAAGGAAATCGTGGGCTTCTTACAAGTGATCAAGTTCTCTTTTCAACCCCAGGAGCCGTAACCATTGATATTGTGAATCGTTTTGCAAACAGCCAAGCTGAATTCTTCACAAGTTTTAGTCAGTCTATGATTAAAATGGGAAATATCAGTCCTTTGACTGGAACTGATGGAGAAATTAGATTGAATTGTGCCAGAGTTAATCCACTACCTGCTATTGCTGATATGTAA 1002 43.81 MSFLKAIIAFVIVTSTLLIAPSRAQLSPTFYATTCPNVSAIVKEMVSQALVTNARAGAQLIRFHFHDCFVNGCDGSVLLEDAEGIESEQNAQGNEGIQGQDIVANIKTAVENACPQVVSCADILAIASNASVSLARGQGWEVLLGRRDSIIANVSGARSNLPSPFEPLQNLTVKFAAVGLDSTDLVVLSGAHTFGRSRCRFFSGRLNNFNGTGAPDPTLDSTYREVLLQACPEGGDNNRVNLDPTTPDEFDKNYYTNLQGNRGLLTSDQVLFSTPGAVTIDIVNRFANSQAEFFTSFSQSMIKMGNISPLTGTDGEIRLNCARVNPLPAIADM 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5165344 5167216 + evm.model.ptg000001l.712 HCH5g0712 544864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0712 333 Pfam Peroxidase 42 289 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 SUPERFAMILY Heme-dependent peroxidases 25 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 ProSiteProfiles Plant heme peroxidase family profile. 25 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 PANTHER PEROXIDASE 72-RELATED 13 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 CDD secretory_peroxidase 25 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH5g0712 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
HCH5g0712 333 Gene3D Peroxidase, domain 2 162 304 - -
HCH5g0712 333 Gene3D - 30 325 - -
HCH5g0712 333 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0712 333 FunFam Peroxidase 162 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1426 HCH-Chr2:55950422 HCH5g0712 HCH-Chr5:5165344 1.90E-99 dispersed
HCH2g1427 HCH-Chr2:55957542 HCH5g0712 HCH-Chr5:5165344 4.50E-106 dispersed
HCH5g0712 HCH-Chr5:5165344 HCH7g0118 HCH-Chr7:769221 7.00E-65 dispersed
HCH5g0711 HCH-Chr5:5156946 HCH5g0712 HCH-Chr5:5165344 1.40E-145 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0712 K00430 - csv:101215530 484.952