Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0726 ATGGCTCCATCCTCCCTTGCTTCACGTTTCCAACAATCAATCACTCCCAACGCTCTCAGATCCTATTTTGCAGAGTTCATCTCCACATTCTTTTATGTTTTCGCCGTCGTCGGATCGACAATGGCGTCCCAGAAGTTGATATCAGATGATCATGCTGCTACTACAAACCCTTCAAGTCTTCTTGTGGCTGCTATAGTTAATGTTTTCGCTTTGGCATCGGCCGTTTATATTGCCGCTAATATCTCCGGTGGCCATGTCAATCCAGCGGTGACCTTCGGTATGGTGGTTGGCGGCCATGTTAGTGTCCTGACTGCTCTATTCTACTGGTTTGCACAGATGCTTGCTTCTGTTTTGGCATGCATTTTATTGAGAGTAACTGTCGTTGGACAGCGTGTACCAAGCTATGGCATAGCAGAGGAAATGACAGGGTTTGGAGCATCTGTATTAGAAGGCATACTGACTTTTACTTTGGTGTATACTGTCTACGCTGCTGGTGATCCCAGAAGAGGTTCATGCAGTGCAATGGGAGCCATGATGATTGGGTTGGTAGCCGGAGCCAACGTCCTCGCTGCCGGGCCATTCTCCGGTGGATCGGTTAACCCGGCATGCGCTTTCGGGTCGGCTATTGTGGCCGGGAGCTTCAGGAACCAGGCAGTGTACTGGGTTGGACCATTGATTGGTGCTGCTCTTGCTGCCATCATATATGATAATGTGGTTTTCCCCCCTCAAAATCCTGATTCATTTAGAGGTGTTTCTGAGGTAGTTGGGGTGTAA 774 48.84 MAPSSLASRFQQSITPNALRSYFAEFISTFFYVFAVVGSTMASQKLISDDHAATTNPSSLLVAAIVNVFALASAVYIAANISGGHVNPAVTFGMVVGGHVSVLTALFYWFAQMLASVLACILLRVTVVGQRVPSYGIAEEMTGFGASVLEGILTFTLVYTVYAAGDPRRGSCSAMGAMMIGLVAGANVLAAGPFSGGSVNPACAFGSAIVAGSFRNQAVYWVGPLIGAALAAIIYDNVVFPPQNPDSFRGVSEVVGV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5267021 5268123 - evm.model.ptg000001l.726 HCH5g0726 544878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0726 257 SUPERFAMILY Aquaporin-like 12 244 IPR023271 -
HCH5g0726 257 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0726 257 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0726 257 PRINTS Major intrinsic protein family signature 20 39 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0726 257 PRINTS Major intrinsic protein family signature 218 238 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0726 257 PRINTS Major intrinsic protein family signature 181 203 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0726 257 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH5g0726 257 FunFam Probable aquaporin TIP5-1 4 247 - -
HCH5g0726 257 Gene3D Glycerol uptake facilitator protein. 5 247 IPR023271 -
HCH5g0726 257 PANTHER AQUAPORIN-8 10 240 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
HCH5g0726 257 ProSitePatterns MIP family signature. 85 93 IPR022357 -
HCH5g0726 257 Pfam Major intrinsic protein 16 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0726 HCH-Chr5:5267021 HCH9g0550 HCH-Chr9:3606065 7.80E-48 dispersed
HCH5g0726 HCH-Chr5:5267021 HCH4g1415 HCH-Chr4:10392737 2.00E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0726 K09873 - csv:101214078 385.956