Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0736 ATGAGTGGAAGGCTTCATTTTTCCATCTTTTTCCTTCCCTTTTTTCTGTCATTAATCTCCCCAGCTCTTTCAAAGCAGCTACATTTCCCTAATGCTATAGAGATTTGGTGCAAAAGAACCCCATATCCAGATGTATGCATGCACTTTTTCAATAGCATAGAAGGAGATTTTGATCCAAAGAATGTGTCTGAGTTCAAGAAAATGGCACTGAAAATTGCCTTGGAAAGAGCTCAGTCAGCGCACAACCACACCAAAGGGCTAGGCTACAAATGCAGAAACAAGAAAGAGAAAGCTGCATGGACCGATTGCTTGCAGCTCTATGAAAACACAATCCTCCAACTCAACAAAACCTTCACTGATTGCAGCACTTTCGACGTCCAAACATGGCTCAGCGCAGCCTTGACCAACTTCGAAACATGCCGAGCTGGGTTCGCAGAGCTCAACGTCACCGACTACGTCTTCTCTCTCATGTCCAACAACAATGTCACAAAGCTCATTAGCAATGGCTTAGCTATTAACAACGGATCGAGTTCTCTACCGACAACCGATTACAAAGATGGCTTTCCAGGATGGTTAAAAGGCGGCGATAGAAAGCTGCTGCAGTCGCCGTCAACGAGGCCGAACCTGGTGGTGGCTCAAGATGGGTCAGGGAATTACAAGACTATTCAGGCTGCTTTGAGTGCAGCAGAGAAGAGGAGTGGAAATGGAAGGTTCATAATATATATAAAGAAAGGGATTTATAAAGAGAATCTTGTGATTGGGAACAAGATGAAGAATATAATGCTTCTTGGTGATGGAATGAGGTATACTATCATTACTGGTAGTAGAAGTGTTGGAGGAGGCTCTACTACTTTCAACTCTGCTACTCTTGCTGTGACCGGGGAAGGTTTCATAGCTCGTGGCATCACATTCCGCAACACTGCCGGCCCCCAAAACCACCAAGCAGTCGCCCTCCGATCCGGCTCCGATCTCTCCGTCTTCTATAGCTGCGGCTTTGAAGGATATCAAGACACCCTCTACGTCCATTCCCAGAGACAATTCTACAGAGAATGCTACATTTACGGCACAGTAGATTTCATATTCGGCAACGCAGCAGTCGTGCTCCAAAACTGCATGATTTACGCAAGAAAACCTATGCCGGGTCAGCAATGCGTCGTCACCGCACAAGGCCGGACCGACCCGAACCAAAACACCGGAATCTCGATCCACAACTCGAGAGTAATGGCGGCGGCAGACCTCGTACCGGTGCGAAACACGGTTAGAACTTACTTGGGAAGGCCATGGAAGGAGTATTCAAGTACAGTTTACATGCAGAGTTTCCTGGATAGTTTAGTGAATCCTGCTGGATGGTTGGAATGGAGTGGTAATTTTGCTCTTAATACGTTGTATTATGGAGAATACAGGAATTTTGGGCCGGCTTCTTCCACCAATGGAAGAGTGAAATGGAAAGGTTATAGAGTTATAACAAGTGCTGCAGAAGCTTCTAAGTTTAGTGTTCAGAATTTCATTGCTGGGAGGTCATGGTTGCCAGGAACTGGAGTCCCATTCACTGCTGGCCTTTGA 1563 46.13 MSGRLHFSIFFLPFFLSLISPALSKQLHFPNAIEIWCKRTPYPDVCMHFFNSIEGDFDPKNVSEFKKMALKIALERAQSAHNHTKGLGYKCRNKKEKAAWTDCLQLYENTILQLNKTFTDCSTFDVQTWLSAALTNFETCRAGFAELNVTDYVFSLMSNNNVTKLISNGLAINNGSSSLPTTDYKDGFPGWLKGGDRKLLQSPSTRPNLVVAQDGSGNYKTIQAALSAAEKRSGNGRFIIYIKKGIYKENLVIGNKMKNIMLLGDGMRYTIITGSRSVGGGSTTFNSATLAVTGEGFIARGITFRNTAGPQNHQAVALRSGSDLSVFYSCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPMPGQQCVVTAQGRTDPNQNTGISIHNSRVMAAADLVPVRNTVRTYLGRPWKEYSSTVYMQSFLDSLVNPAGWLEWSGNFALNTLYYGEYRNFGPASSTNGRVKWKGYRVITSAAEASKFSVQNFIAGRSWLPGTGVPFTAGL 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5353497 5355743 - evm.model.ptg000001l.736 HCH5g0736 544888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0736 520 FunFam Pectinesterase 202 520 - -
HCH5g0736 520 ProSitePatterns Pectinesterase signature 2. 353 362 IPR033131 -
HCH5g0736 520 PANTHER PECTINESTERASE 20 510 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH5g0736 520 NCBIfam pectinesterase inhibitor domain 6 174 IPR006501 GO:0004857(InterPro)
HCH5g0736 520 CDD PMEI-like_3 36 174 - -
HCH5g0736 520 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
HCH5g0736 520 Pfam Pectinesterase 208 505 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH5g0736 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 174 IPR035513 -
HCH5g0736 520 Pfam Plant invertase/pectin methylesterase inhibitor 32 172 IPR006501 GO:0004857(InterPro)
HCH5g0736 520 SUPERFAMILY Pectin lyase-like 205 519 IPR011050 -
HCH5g0736 520 Gene3D - 203 520 IPR012334 -
HCH5g0736 520 SMART PMEI_2 28 172 IPR006501 GO:0004857(InterPro)
HCH5g0736 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 175 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1341 HCH-Chr10:45972961 HCH5g0736 HCH-Chr5:5353497 2.10E-135 dispersed
HCH11g1125 HCH-Chr11:42996005 HCH5g0736 HCH-Chr5:5353497 1.30E-164 dispersed
HCH4g1043 HCH-Chr4:6725578 HCH5g0736 HCH-Chr5:5353497 3.30E-112 dispersed
HCH5g0736 HCH-Chr5:5353497 HCH7g1526 HCH-Chr7:47791557 1.20E-175 dispersed
HCH11g1124 HCH-Chr11:42991513 HCH5g0736 HCH-Chr5:5353497 1.40E-218 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0736 K01051 - csv:101216005 773.467