Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0755 ATGGGAGAGCTTCTTCCCTTCCTACAATGGTGGAAAATCAACATGAAGCTGCTCTCTCTCTTTCTCATTTTTTCATTTTCATTTTTTCAACATTCTCCAGCTTCATCTCTCATTCATGAAGCTAAAGCGTTATTGTCAATCAAGGCCTCGTTTGGCAATGTAGGAAATATGTTGCTTGACTGGAATGATCATGATAATGATATTTGTTCATGGCGTGGAGTTTTATGTGATAATGTTAGCCTTTCAGTTTCAGCTCTGAATTTATCAAGAATGTATCTGGGAGGGGAGATTTCACCAGCTATTGGAGATCTGATAAACTTACAGTCCATAGATCTTCAAGGGAATAATTTGACAGGACAAATCCCAGATGAGATTGGGAACTGTGGTCTTCTAGTTCATCTTGACTTATCTGATAATTTACTTTTTGGAGACATCCCTTTTTCATTATCCAAGTTGAAGCAGCTGGAGATACTAAATTTGAAAAACAATGATCTGACTGGTCCTATTCCTTCAACGCTCACGCAGATTCCTAATCTGAAAATTCTTGACCTTGCCCGCAACACGCTTACAGGGGAGATACCTAGATTAATCTATTGGAATGAAGTATTGCAATATCTTGGATTGCGGGGAAATTCTTTGTCGGGCTCCTTATCTCCTGACATGTGTCAGTTGACTGGGCTGTGGTATTTTGATGTTAAAGGCAACAATCTGACCGGGACTATACCAGATAGCATTGGAAACTGTACTAGTTTTCAAATTTTTGACATATCGTACAATCAGATTTCAGGGGAAATTCCATACAACATTGGATTTCTACAAGTGGCTACTTTGTCTCTACAGGGAAATAAGCTGACTGGTTGGATTCCTGAAGTCATTGGATTGATGCAGGCTCTTGCTGTCCTGGATTTGAGTGAGAATGAGCTTGAAGGGTCAATACCACCAATATTTGGCAACTTGTCATACACAGGAAAGCTGTACCTTCATGGAAATAAACTGACTGGTTCAATTCCTCCAGAGCTCGGCAATATGTCAAGACTTAGCTACTTGCAATTGAATGACAACCAGCTTATTGGAACTATTCCTTCTGAACTTGGAAAGTTGGATCAATTGTTTGAACTGAATCTTGCTAACAATTATCTTGAAGGACCCATCCCTCACAACATCAGCTCCTGCACTGCATTGAACCAATTCAATGTGCATGGCAACCGACTTAACGGATCAATTCCACCTGGTTTCCATAATCTGAAGAGTTTAACCTACTTGAATCTATCAGCCAACCATTTCAAAGGCAGGATACCAGTTGAGCTGGGACGCATAGTTAACCTTGATACCTTGGATCTATCTTGCAATGGCTTTTCAGGTCGCGTTCCTGACTCTATCGGCGACTTGGAACATCTGCTTACACTCAATTTGAGTGACAATCATCTTAATGGGCCCCTGCCAGAAGAATTTCGGAATCTCAGAAGTATTCTGATTATTGATATGTCTTTCAACAACTTCTCTGGTTCCATTCCCTCGGAGTGGGGACAATTGCAAGATATTATCTCTCTAATTTTGAACAACAACAATTTGGAAGGGAACATACCTGATCAGCTAACAAATTGTTTTAATCTCGCCCTTTTGAACCTTTCATACAATAACTTATCTGGAAAATTACCTCTCATGAGAAATTTCTCTCGATTTGAACTTGATAGTTTTTTGGGGAATCCGCTACTCTGTGGCGACTGGCCGGGATCAGTCTGTAGGTCTTATATTGAAAGATCAAAAGCAATATTTTCGACGACAGCAGTAGTTTGCATGACATTGGGCTTCATTATATTATTGTTCATGGTAATTATTGCTGTGTACAACTCCAACCCATCAAAGCGATTGGTGAAGGGTTCAAGCAAGACAGGGCAAGGTCCCCTGAATTTCGTGGTTCTTCACATGGATATGGCAATTCACACCTTAGATGACATTGTGAGGATCACTGAGAATTTCAGTGACAAATATATTATAGGTCATGGTGCTTCTAGCACTGTGTACAAATGTGTATTGAAAAATTCCCGACCTATTGCAATTAAGCGATTTTACAACCAATTTACTGACAATATTAGGGACTTTGATACTGAACTTGAAACCATTGGCAGTATCAGACATAGAAATCTTGTCACCCTTCATGGTTATTCTCTATCTCCCTGTGGAAACCTCCTATTCTATGACTACATGGTAAATGGTTCTCTGTGGGACCTGCTTCACGGATCTGGCAAGGTAAAATTGGATTGGGAAGCACGTCTGAAGATAGCTGTTGGAGCTGCTCAAGGTCTTGCATATCTTCACCATGATTGCAACCCTCGAATTGTTCACAGGGACGTCAAGTCTTCTAACATTTTACTGGATGAAAATTTTGAAGCCCATCTTTCTGATTTTGGGATTGCCAAAACTATTCCGACTTCCAAAACTCACATTTCAACTAGTGTGCTTGGAACATTTGGATATATTGATCCAGAGTATGCCAGAACCTTGCAGTTGACTGATAAATCTGATGTCTATAGCTTCGGAGTTGTTCTTCTTGAGCTACTGACTGGGAAGCAAGCTGTAGATGATGACTCTAATTTGCATCAACTGATACTGTCCAAGACGGATGATGATACGGTAATGGAGGTTGTTGATCCCGAGGTGTCTGTTACCTGCATGGATCTGACCCATGTCAAGAAAACCTTCCAACTTGCTCTCCTCTGCACAAAACACAATCCTTTGGAACGGCCAACCATGCATGAAGTTGCACGAGTATTAATCTCCTTCCAGCCGCCGCTACCAAGCATGAAACAAACTTCATTTTCATCTATAAAACTCGATTATTCACAATTTCTGATTGACAAGGACCAGAGTCAGAAGCCTGAGCAGGAGCAGCAGCTGAAAACCGATCACAGTTCTTCTGACCATCACTGGTATGTTCGATTTGACGGAGTTGTATCAAATAGCAGTCTTTGA 2973 40.7 MGELLPFLQWWKINMKLLSLFLIFSFSFFQHSPASSLIHEAKALLSIKASFGNVGNMLLDWNDHDNDICSWRGVLCDNVSLSVSALNLSRMYLGGEISPAIGDLINLQSIDLQGNNLTGQIPDEIGNCGLLVHLDLSDNLLFGDIPFSLSKLKQLEILNLKNNDLTGPIPSTLTQIPNLKILDLARNTLTGEIPRLIYWNEVLQYLGLRGNSLSGSLSPDMCQLTGLWYFDVKGNNLTGTIPDSIGNCTSFQIFDISYNQISGEIPYNIGFLQVATLSLQGNKLTGWIPEVIGLMQALAVLDLSENELEGSIPPIFGNLSYTGKLYLHGNKLTGSIPPELGNMSRLSYLQLNDNQLIGTIPSELGKLDQLFELNLANNYLEGPIPHNISSCTALNQFNVHGNRLNGSIPPGFHNLKSLTYLNLSANHFKGRIPVELGRIVNLDTLDLSCNGFSGRVPDSIGDLEHLLTLNLSDNHLNGPLPEEFRNLRSILIIDMSFNNFSGSIPSEWGQLQDIISLILNNNNLEGNIPDQLTNCFNLALLNLSYNNLSGKLPLMRNFSRFELDSFLGNPLLCGDWPGSVCRSYIERSKAIFSTTAVVCMTLGFIILLFMVIIAVYNSNPSKRLVKGSSKTGQGPLNFVVLHMDMAIHTLDDIVRITENFSDKYIIGHGASSTVYKCVLKNSRPIAIKRFYNQFTDNIRDFDTELETIGSIRHRNLVTLHGYSLSPCGNLLFYDYMVNGSLWDLLHGSGKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIVHRDVKSSNILLDENFEAHLSDFGIAKTIPTSKTHISTSVLGTFGYIDPEYARTLQLTDKSDVYSFGVVLLELLTGKQAVDDDSNLHQLILSKTDDDTVMEVVDPEVSVTCMDLTHVKKTFQLALLCTKHNPLERPTMHEVARVLISFQPPLPSMKQTSFSSIKLDYSQFLIDKDQSQKPEQEQQLKTDHSSSDHHWYVRFDGVVSNSSL 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5559540 5566216 - evm.model.ptg000001l.755 HCH5g0755 544907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0755 990 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 631 735 - -
HCH5g0755 990 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 736 936 - -
HCH5g0755 990 SMART LRR_typ_2 343 367 IPR003591 -
HCH5g0755 990 SMART LRR_typ_2 415 439 IPR003591 -
HCH5g0755 990 SMART LRR_typ_2 104 128 IPR003591 -
HCH5g0755 990 SMART LRR_typ_2 176 200 IPR003591 -
HCH5g0755 990 SMART LRR_typ_2 224 248 IPR003591 -
HCH5g0755 990 SMART LRR_typ_2 295 318 IPR003591 -
HCH5g0755 990 SMART LRR_typ_2 463 486 IPR003591 -
HCH5g0755 990 SMART LRR_typ_2 152 175 IPR003591 -
HCH5g0755 990 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 201 310 - -
HCH5g0755 990 SUPERFAMILY L domain-like 316 574 - -
HCH5g0755 990 SUPERFAMILY Protein kinase-like (PK-like) 638 925 IPR011009 -
HCH5g0755 990 SUPERFAMILY L domain-like 38 333 - -
HCH5g0755 990 Gene3D Ribonuclease Inhibitor 201 311 IPR032675 -
HCH5g0755 990 Gene3D Phosphorylase Kinase; domain 1 627 735 - -
HCH5g0755 990 ProSiteProfiles Protein kinase domain profile. 660 932 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0755 990 Pfam Protein kinase domain 662 922 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0755 990 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 311 584 - -
HCH5g0755 990 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
HCH5g0755 990 Pfam Leucine Rich Repeat 298 319 IPR001611 GO:0005515(InterPro)
HCH5g0755 990 Pfam Leucine Rich Repeat 324 343 IPR001611 GO:0005515(InterPro)
HCH5g0755 990 Pfam Leucine Rich Repeat 370 391 IPR001611 GO:0005515(InterPro)
HCH5g0755 990 Pfam Leucine Rich Repeat 252 272 IPR001611 GO:0005515(InterPro)
HCH5g0755 990 Pfam Leucine Rich Repeat 227 248 IPR001611 GO:0005515(InterPro)
HCH5g0755 990 Pfam Leucine Rich Repeat 106 128 IPR001611 GO:0005515(InterPro)
HCH5g0755 990 Pfam Leucine Rich Repeat 394 415 IPR001611 GO:0005515(InterPro)
HCH5g0755 990 Pfam Leucine Rich Repeat 417 437 IPR001611 GO:0005515(InterPro)
HCH5g0755 990 Pfam Leucine Rich Repeat 131 152 IPR001611 GO:0005515(InterPro)
HCH5g0755 990 Pfam Leucine Rich Repeat 346 367 IPR001611 GO:0005515(InterPro)
HCH5g0755 990 ProSitePatterns Protein kinases ATP-binding region signature. 666 688 IPR017441 GO:0005524(InterPro)
HCH5g0755 990 Gene3D Ribonuclease Inhibitor 37 200 IPR032675 -
HCH5g0755 990 SMART serkin_6 660 932 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0755 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g0755 990 Gene3D Transferase(Phosphotransferase) domain 1 736 940 - -
HCH5g0755 990 Gene3D Ribonuclease Inhibitor 312 583 IPR032675 -
HCH5g0755 990 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 37 200 - -
HCH5g0755 990 Pfam Leucine rich repeat 154 213 IPR001611 GO:0005515(InterPro)
HCH5g0755 990 Pfam Leucine rich repeat 441 500 IPR001611 GO:0005515(InterPro)
HCH5g0755 990 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 23 925 IPR050647 GO:0009553(PANTHER)|GO:0010103(PANTHER)|GO:0048481(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0463 HCH-Chr12:2710866 HCH5g0755 HCH-Chr5:5559540 4.20E-134 dispersed
HCH5g0755 HCH-Chr5:5559540 HCH6g1442 HCH-Chr6:48158414 6.20E-69 dispersed
HCH5g0755 HCH-Chr5:5559540 HCH6g0960 HCH-Chr6:44410901 2.00E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81515 PF00069 Pkinase 1.70E-42 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0755 K20718 - csv:101213139 1530.0