Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0771 ATGGCTACTTCAATTCTCTCTCTCTCTCTCACTCTAAAACCCAGTCAAATTCATAATCACATTCCCAAGCGACGACTAATCACCGCTTCCTCGCTGCCACCACCGCTCTCTTTCTCAAACAAAAAACCCTCTAACATTATTACAACAATCAAAAACTCAATCAATACCTTGGCGGCGGCGTATATAACGGGACCCGCATCCGACCCTATCGTGACCGAACCCGACCCGAAAGCCGACGACGGCTCCGATGCCCAGGCCCCGTTACCGGGTGTCTTGAATTGGGGCCTTTTATGGAGGCTGTTGATGAATCATAAGCTACGGCTTGTGGTTTCCTTGCTTACTCTTATTGGATGCACCACTTGTACTCTTTCAATGCCTTTGTTTTCTGGTAGATTTTTTGAAGTACTTATAGGTGCAAAACCTGGGCCTTTGTGGAGGCTGCTGAGTACGGTTGGAGTTTTATATGCATTGGAACCAATATTCACGGTTTTATTCGTGATGAACATGAATACCATATGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGATTACTAATTCAGAAGGTGGAATTTTTTGACAGATACAAGGTTGGTGAAATTACTGGACTGGTAACTTCTGATTTGGGCTGTCTTAAGGATGTGGTGAGTGAGAATATTTCAAGGGATCGTGGATTTAGAGCATTCTCTGAGGTGATTGGAACAATCTGTATATTATTTGCATTGTCCCCCCAGCTTGCACCTATTCTTGGCCTGCTGATGCTATCTGTATCTCTTTCAGTAGCTATATACAAGCGTTCAACAATTCCTGTATTTAAAGCACATGGATTAGCTCAAGCATCCATGGCTGATTGTGCATCAGAGACATTTTCTGCCATTCGTACTGTGAGATCCTTTGGTGGTGAAAAGCGTCAAATGTTCACTTTCGGTCACCAGGTTATTGCATACGAGGGTAGTGGCATAGCACTTGGGACTTTTAAATCTCTGAACGAATCTTTAACTAGAGTTGCTGTCTATGTTTCACTTATGACATTATACTGTCTTGGTGGAGACAAAGTGAAGGCGGGTGAACTTTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACCCTAACATTTGCTGTTCAAGGATTAGTAAATACATTTGGAGATCTCCGACGAACTTTTTCTGCCGTTGAGAGAATTAATTCGGTTTTAAATGTAGAAATTGATGAAGCCCTTGCATATGGTTTAGAAAAAGAGATGCAACAAAAGGAGTTACATGATGAAAGATATAAGCTGCTATTCTCTAGTGATACTGATGAAAGTAGCCAATTTGTAAAACCACGTTACATGGCAGCTCTAAAATCTTCCAGCAATGTTATTAGTCTTGCTTGGTCTGGTGATATCTGTCTTGAAGATGTGCAGTTTTCCTATCCTCTTAGACCTGACGTGGACATTCTTAATGGTTTGAATTTAACCCTAAAATGTGGAACCATAACAGCGCTAGTGGGTCCTAGTGGGGCAGGAAAGAGTACAATAGTACAGCTGTTGGCCCGTTTTTATGAGCCCAAAAGAGGTCAGATAAAAGTTTCTGGTGAGGATATCCGTGCATTTGATAAGAGAGAATGGGCTCGTGCGGTTTCAATAGTGAATCAAGAACCTGTTCTGTTTTCAGCGTCTGTCGGAGAAAATATCGCATATGGACTTCCAGATGATAATGTAACAAAGGATGAGGTGATAGAAGCAGCCAAAGCAGCAAATGCTCACGATTTCATTGTTTCGCTTCCCCAGGGTTATGACACGGAAGTCGGTGAACGTGGAGGCTTACTAAGTGGTGGCCAGAGACAGAGAATTGCTATTGCGAGAGCTTTGCTTAAGAACTCTCCAATCCTTATACTGGATGAGGCAACCAGTGCACTGGATGCCATCAGTGAGCGACTGGTCCAGGACGCTCTGAATCGTCTAATGAAGGGGAGGACGACATTAGTGATTGCTCATCGGTTGAGTACAGTTCAAAACGCCCATCAAATTGCATTTTGTTCTGATGGAAAAATTTTAGAGCTGGGAAGTCATTTGGAACTGTTGGGTAAGAAGGGTCGGTATGCTGCATTAGTTGGCACACAAAGGCTGGCTTTCGAGTGA 2139 42.87 MATSILSLSLTLKPSQIHNHIPKRRLITASSLPPPLSFSNKKPSNIITTIKNSINTLAAAYITGPASDPIVTEPDPKADDGSDAQAPLPGVLNWGLLWRLLMNHKLRLVVSLLTLIGCTTCTLSMPLFSGRFFEVLIGAKPGPLWRLLSTVGVLYALEPIFTVLFVMNMNTIWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLVTSDLGCLKDVVSENISRDRGFRAFSEVIGTICILFALSPQLAPILGLLMLSVSLSVAIYKRSTIPVFKAHGLAQASMADCASETFSAIRTVRSFGGEKRQMFTFGHQVIAYEGSGIALGTFKSLNESLTRVAVYVSLMTLYCLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRRTFSAVERINSVLNVEIDEALAYGLEKEMQQKELHDERYKLLFSSDTDESSQFVKPRYMAALKSSSNVISLAWSGDICLEDVQFSYPLRPDVDILNGLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPKRGQIKVSGEDIRAFDKREWARAVSIVNQEPVLFSASVGENIAYGLPDDNVTKDEVIEAAKAANAHDFIVSLPQGYDTEVGERGGLLSGGQRQRIAIARALLKNSPILILDEATSALDAISERLVQDALNRLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKILELGSHLELLGKKGRYAALVGTQRLAFE 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5830869 5840031 + evm.model.ptg000001l.771 HCH5g0771 544923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0771 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 707 IPR027417 -
HCH5g0771 712 Gene3D - 466 709 IPR027417 -
HCH5g0771 712 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 468 706 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH5g0771 712 SUPERFAMILY ABC transporter transmembrane region 94 409 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
HCH5g0771 712 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 109 392 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
HCH5g0771 712 SMART AAA_5 495 690 IPR003593 GO:0016887(InterPro)
HCH5g0771 712 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 85 707 IPR039421 GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER)
HCH5g0771 712 Pfam ABC transporter 486 637 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH5g0771 712 CDD ABC_MTABC3_MDL1_MDL2 468 707 - -
HCH5g0771 712 ProSitePatterns ABC transporters family signature. 609 623 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH5g0771 712 CDD ABC_6TM_TAP_ABCB8_10_like 112 400 - -
HCH5g0771 712 Pfam ABC transporter transmembrane region 109 379 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
HCH5g0771 712 Gene3D ABC transporter type 1, transmembrane domain 93 410 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
HCH5g0771 712 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 466 710 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0771 HCH-Chr5:5830869 HCH8g0705 HCH-Chr8:43767619 8.70E-65 dispersed
HCH2g0332 HCH-Chr2:43703631 HCH5g0771 HCH-Chr5:5830869 3.00E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0771 K05657 - csv:101211598 1095.88