Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0774 ATGGACACTTTCTCATATGGGTCAACTTCTAAACCCAATAACTTTTCTGATGAAGAGGTTTTATTGGCATCGAGGTATCCAAAGAAGAGAGCTGGGAGGAAGAAGTTCAACGAAACTCGGCACCCGGTTTACCGTGGCGTAAGGAGAAGGAACTCCGGGAAATGGGTTTGTGAAGTTAGAGAACCGAATAAGAAGACTAGGATTTGGCTCGGGACTTTCCCTACGGAGGAAATGGCTGCCAGGGCTCATGATGTTGCGGCGTTGGCGTTGAGGGGTCGCTCCGCTTGCTTGAATTTCGCAGACTCGGCGTGGCGCCTACCGGTCCCGGCTACGGTTGATGCTAAGGATATTCAAAAGGCGGCTGCGGAGGCGGCGGAGGCGTTTCGGCCAGCTGAGTTGGATAATGCAACTGCATTGGAGTCGACGGAGGAGGCGGAGGCTGCGGTGGTGGGGGGCAATGGAAGAGAGAATGTGTTTTATATGGATGAAGAAGATGTATTTGGAATGCCGGGATTGTTGGTGAATATGGCGGAGGGAATGTTGTTGCCGCCGCCATATTATGGTGGTGATATGGAATTTGATGATAACATCTCCTTATGGAGTTATTCAATTTAA 615 50.24 MDTFSYGSTSKPNNFSDEEVLLASRYPKKRAGRKKFNETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTEEMAARAHDVAALALRGRSACLNFADSAWRLPVPATVDAKDIQKAAAEAAEAFRPAELDNATALESTEEAEAAVVGGNGRENVFYMDEEDVFGMPGLLVNMAEGMLLPPPYYGGDMEFDDNISLWSYSI 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5862230 5862844 - evm.model.ptg000001l.774 HCH5g0774 544926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0774 204 FunFam Ethylene-responsive transcription factor 2 42 101 - -
HCH5g0774 204 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0774 204 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 202 IPR045277 GO:0003700(InterPro)
HCH5g0774 204 Pfam AP2 domain 42 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0774 204 SMART rav1_2 43 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0774 204 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0774 204 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0774 204 SUPERFAMILY DNA-binding domain 43 102 IPR016177 GO:0003677(InterPro)
HCH5g0774 204 CDD AP2 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0774 204 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0384 HCH-Chr11:3657614 HCH5g0774 HCH-Chr5:5862230 3.20E-39 dispersed
HCH5g0774 HCH-Chr5:5862230 HCH9g0513 HCH-Chr9:3295237 1.20E-30 dispersed
HCH11g1189 HCH-Chr11:44189533 HCH5g0774 HCH-Chr5:5862230 1.00E-70 wgd
HCH5g0471 HCH-Chr5:3190079 HCH5g0774 HCH-Chr5:5862230 3.90E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33624 PF00847 AP2 6.30E-16 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0774 - - - 0.0