Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0778 ATGGCATCTTCTCGGGTGGCGGGAGGATTAGTGCAATCTTCTTCGAGTTCTGGGATTTTCTTTCAAGGAGATGGCCAGTCCCAGGCTGTTGCTAAATCTCACTTGAGCTCATCTTATGGAAACTCATCTAATTCAATACTAGGAAGTGGCCATTCAAATTTAGGTCCAGTTTCTGGGGATATGAGTAATGCAGTGTTAGGTAGTGTGGCAAACTCGGGACCGAGTGTTGGGGCAAGTTCGTTGGTTACGGATGCGAACTCTGCACTTTCAGGTGGGCCCCACTTGCAGAGAAGTCCAAGCATGAATGGGGAATCATACTTGCGTTTACCTACATCGCCTTTGTCGTTTTCGTCGAATAACTTAAGTATCTCTGGTGCATCCCTCATTGATGCATCTTCCGTAGTGCAGCACAATTCTCAGCAAGACCGTAATGCCTCACAGTTGCAACAGACACAGCAGCCGACCCGACAAGTTGCTCCTGGTGATGCATCATTGCCAAATTCACAAAATGGCCAAGCTTCACTTCCCATGGGAGCACGTGTCCCTGGATCTCTCATGTCAGATCCCAATGGTTATTCTCAGTCACAGAAGAAACCACGCTTGGATGTTAAGCAGGATGATTTTCTACCACAGCAGGTGCTGCAACAGTTACTGCAGAGACATGATTCCATGCAGCTGCAAGGTCGTAACCCCCAGTTACAGGCATTACTTCAGCAACAGAGATTGCGACAACAGCAACAAATTTTGCAATCTTTGCCCCCTTTGCAGAGAGCCCATTTGCAGCAGCAGCAGCAGATACAGTTGAGGCAGCAACTTCAACAACAGGCAGTACAACCCGTAAATGCTTTGAAGCGGCCCCAAGATGGTGGTGTTTGTGCTCGGCGGCTTATGCAGTACCTATATCATCAACGGCAAAGGCCTGCTGATAATAGTATTGCCTATTGGAGGAAGTTCGTGACAGAGTATTACTCTCCTCGTGCAAAGAAAAGGTGGTGTTTGTCATTATATGATAATGTTGGTCATCATGCTCTTGGTGTTTTCCCTCAGGCTGCAATGGATGCATGGCAGTGTGACATTTGTGGTTCAAAATCTGGAAAGGGATTTGAGGCCGCTTTTGAAGTGCTTCCTAGACTTAATGAGATCAAATTTGGGAGTGGAGTCATCGATGAGCTCTTGTTCTTGGATTTGCCACGGGAATGCAGATTTTCCTCTGGAATTATGATGTTAGAATATGGAAAAGCAGTTCAAGAGAGTGTATATGAACAACTTCGTGTTGTTCGTGAGGGTCAGCTTCGTATCATATTTACACACGACTTGAAGATATTGGCATGGGAGTTTTGTGCAAGACGCCATGAAGAACTTCTTCCTCGTAGGCTGGTTGCACCTCAGGTGAATCAGTTGGTTCAGGTGGCACAGAAATGCCAGAGCACTATTGCTGAAGGTGGATCTGATGGGGTTTCTCAGCAGGATTTACAAGCAAATGGCAATATGGTTCTGACAGCTGGGCAGCATCTTGCAAAGAGTCTGGAGTTGCAGTCGTTGAATGATTTGGGGTTCTCTAAAAGATATGTTAGATGCTTGCAGATATCGGAGGTTGTCAATAGCATGAAAGATCTGATTGATTTCTGTAGGGAACAGAAAACTGGGCCAATTGAGAGTCTGAAAAGTTATCCTCAGCATGCCACAGCCAAGCTCCAGATGCAAAAGATGCAAGAGATTGAGCAGCTAGCTACCGCTCAGGGTTTGCCAACTGATCGCAACACCCTTAATAGAATGGTAGCCCTGCATCCTGGACTGAATAACCAAATGAGTAGCAACAATCAACTAGTTGGCAGAGGAAATGTAAGTGGTTCGCCTCAAGCAGCTTTGGCACTGTCTAACTACCAAACTCTGTTCATGAGACAGAACTCAATGAATTCAAACTCAAGCCCGCTCCAGCAGGAAGCATCATCCTCCATCAATAATTCAAACCAGAGTCCATCTTCAAGTTTCCATGGGACTGCTGCTTTAACATCTGGATCAATGCAGAACTTACCTGGTAGTGGCTTTTCAAGTCCTCATCTACCTCCACAACAACCTCAGCAATTGCAACAACTGCAACAGCGCTCGAATAGTAATAGCTTACTCCTGCAAAATCATCAACAGAACACCCAAGGTAATGGTAATGGTAATCAGGCCTTGCAACAACAGATGATCCAGCAACTTCTCCAGATGTCTGGTAACAATGGGGGTGGGCAACAGCAATCACTCAGTGGATCAAACACAAATGGAAATGTGGGAGGGGGGAACTGTATGGGGTTTGGAGGCAGCTCTTCTGTGGCAGCTGCTGCCACTGCCAATCCATCAAGTAGTAATCGGGCTGCTCCAAGCCAGAGCAATAGTTTCAAAAGTGCTTCAAACGGTGATGTATCAGCCGGTGCTTCTAATAGTGGGTTCAACCAAAGGACTGTAGATGTGCCTCAAAATCTTCATTTGCAGGAGGACCTGATCCAGGATATAGCCCATGATTTTACAGAAAGTGGGTTTTTTAACAGTGACCTTGATGATAACATGTGCTTTGGCTGGAAAGGTTAA 2574 45.96 MASSRVAGGLVQSSSSSGIFFQGDGQSQAVAKSHLSSSYGNSSNSILGSGHSNLGPVSGDMSNAVLGSVANSGPSVGASSLVTDANSALSGGPHLQRSPSMNGESYLRLPTSPLSFSSNNLSISGASLIDASSVVQHNSQQDRNASQLQQTQQPTRQVAPGDASLPNSQNGQASLPMGARVPGSLMSDPNGYSQSQKKPRLDVKQDDFLPQQVLQQLLQRHDSMQLQGRNPQLQALLQQQRLRQQQQILQSLPPLQRAHLQQQQQIQLRQQLQQQAVQPVNALKRPQDGGVCARRLMQYLYHQRQRPADNSIAYWRKFVTEYYSPRAKKRWCLSLYDNVGHHALGVFPQAAMDAWQCDICGSKSGKGFEAAFEVLPRLNEIKFGSGVIDELLFLDLPRECRFSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTHDLKILAWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAEGGSDGVSQQDLQANGNMVLTAGQHLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKTGPIESLKSYPQHATAKLQMQKMQEIEQLATAQGLPTDRNTLNRMVALHPGLNNQMSSNNQLVGRGNVSGSPQAALALSNYQTLFMRQNSMNSNSSPLQQEASSSINNSNQSPSSSFHGTAALTSGSMQNLPGSGFSSPHLPPQQPQQLQQLQQRSNSNSLLLQNHQQNTQGNGNGNQALQQQMIQQLLQMSGNNGGGQQQSLSGSNTNGNVGGGNCMGFGGSSSVAAAATANPSSSNRAAPSQSNSFKSASNGDVSAGASNSGFNQRTVDVPQNLHLQEDLIQDIAHDFTESGFFNSDLDDNMCFGWKG 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5962685 5968440 + evm.model.ptg000001l.778 HCH5g0778 544930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0778 857 MobiDBLite consensus disorder prediction 134 175 - -
HCH5g0778 857 MobiDBLite consensus disorder prediction 637 702 - -
HCH5g0778 857 Pfam LIM-domain binding protein 295 555 IPR029005 -
HCH5g0778 857 PANTHER LIM DOMAIN-BINDING PROTEIN 15 846 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
HCH5g0778 857 MobiDBLite consensus disorder prediction 87 106 - -
HCH5g0778 857 MobiDBLite consensus disorder prediction 134 205 - -
HCH5g0778 857 MobiDBLite consensus disorder prediction 774 815 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1402 HCH-Chr12:36766478 HCH5g0778 HCH-Chr5:5962685 5.60E-93 dispersed
HCH13g0189 HCH-Chr13:1266322 HCH5g0778 HCH-Chr5:5962685 8.90E-94 dispersed
HCH11g1197 HCH-Chr11:44282975 HCH5g0778 HCH-Chr5:5962685 2.70E-270 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0778 - - - 0.0