Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0821 ATGCCTTCATGGTGGGGGAAGTCATCATCAAAAGATGTAAAGAAGAGCAGGGAAAGTTTTATTGACACATTGCACCGAAAATTTAGAACTTCTGAGGGTAAACCAAACAGCAGATCAGGAGGGTCTCCAAGAAATTGTAACGACACAGTTTCTGAGCATGGATCTCGGTCTCCTGCGCTTTCAAGATCAGTTTCACCTTCCAAACAAGTTTCAAGATGTCAAAGTTTTTCTGAAAGGCCGCAGGCCCAACCACTTCCACTTCCTGGTGCGCAGCCAGCAATTGTAAGTCGTACAGACTCTGGGATTAGTATTTCACCAAAACCAAGAGCAGAAAGGGGCTTGAGACCCTCATCATTTCTACCACTCCCTAGACCAGCATGCATTCGTGGTAGGCCAAATCATACAGATTTAGATGCAGATATGGGTGTTGGTTCAGTTTCCAGTGAGAGCTCAATTGACAGTACCGATCCTTCTGATTCGCGCCATCGTAGTCCTCAGGCAACTGACTATGACCTTGGGACTAAAGCTGCTGCGGGCACTCCTTCCAGTGTCGTTATTAAGGATCAATCTTCTACAGCCCCCCAACCAAGCTTCCAAGAGGCAAAAAAACCAGCAAATATCTCATTGAGCAACCACATTTTCTCTACATCACCCAAACGGAGGCCTTTAAGCAGTCACGTGCCAAATCTACAAGTTCCATATCATGGGATTTTATGCAGTGCTCCGGAGAGTTCCATGTCAAGTCCTTCTAGAAGTCCCATGAGAGGATGTAGCACAGAGCAAATTATTAATAATGCCATTGGTGCTGGAAAGCCTTATTCAGATCTTACTTTTCCTGGGTCAGGCCATTGCTCTAGTCCTGGATCTGGTTACAATTCTGGGCATAATTCTATGGGTGGTGATATGTCAGGGCAGTTGTTTTTGCAACAAAGCAGGGGTAGCCCTGAGTATTCCCCAGCGCCCAGTCCCAGGATGACCAGCCCTGGCCCTAGCTCCAGAGTTCATAGCGGTCCTGTTACCCCAATTCATCCCAGGGCAGGAGGGATGCCAATGGAGTCACTGACAAGCTGGCCTGATGAGAAACAAACTCACCGCTTGCCTCTGCCTCCTGTTTCAATTTCCAATCCTCCATTTTCTCATTCCAATTCAGCTGCAACATCTCCCTCTGTGCCAAGGAGTCCTGGAAGGCCTGACAATCCAGTAAGCCCAGGCTCCCGTTGGAAAAAAGGGAAGCTTTTGGGTAGGGGTACTTTTGGGCATGTTTACGTCGGTTTTAACAGTGAAAGTGGTGAAATGTGTGCCATGAAGGAGGTTACATTATTTTCAGATGATGCAAAGTCCAAGGAAAGTGCGAAGCAATTAATGCAAGAAATTACCTTATTGAGCCGTTTACGGCATCCAAATATTGTGCAGTATTATGGATCTGAAACGGTAGGTGACAAGCTATACATATACCTGGAATATGTGTCTGGTGGCTCTATTTATAAACTTCTCCAAGAATATGGGCAGCTTGGAGAATTAGCACTTCGTAGTTATACTCAGCAAATATTATCTGGGCTTGCATATTTACACGCTAAAAGTACTGTGCACAGGGATATCAAAGGAGCAAATATACTTGTGGATCCAAATGGGCGTGTTAAGTTGGCGGACTTTGGGATGGCAAAGCATATCACGGGGCAGTCATGTCCTTTGTCATTTAAAGGCAGCCCTTACTGGATGGCACCTGAGGTTATTAAAAATTCCAATGGTTGTAACCTTGCGGTGGATATATGGAGTCTTGGATGCACTGTTTTGGAGATGGCTACAACAAAGCCACCTTGGAGTCAGTATGAGGGGGTTGCTGCAATGTTTAAGATTGGTAATAGCAAGGAACTTCCTGCAATCCCAGATCACCTTTCACACGATGGAAAAGACTTCGTTAGACAGTGCCTCCAACGAAATCCACTACATCGTCTTACAGCTGCTCAACTTTTGGAGCATCCTTTTGTCAAGCATGCAGCACCTCTTGAAAGACCAATTTCAGTTTCTGAACATTCAGATACAAATTCTGGAATTACAAATGGAGTCAGAACTCTAGGCATTGAGCCAGTAAGGAACATCAGCATCTTGGATTCTGATAGATCTGCAGCTCATTCATCTAGACTTCCTACAGCTGGTTTTCATTCCAGTGACATCCATATACCGAGGAACTTATCATGTCCTGTTTCACCCATTGGAAGCCCTATGGTGCATTCACGGTCACCACAACACCGCAGCGGAAGAATGTCTCCGTCACCCATCTCTAGCCCCCGGAACACTTCAGGCTCATCGACTCCTCTCACTGGAGGAAGTGGTGCCCTTCCACACCAGCACCTCAAACAGTCTCTATATTTGCAGGAGTGTTTTGGAAGCATGCCAAAATCTTCTATAGGTCCCTTTAGTAATGGCTCTTCCTATCATGATACAAATCCAGACATCTTTCAAGGGATTCTGCCAGGATCTCACATCTTTTCAGAGCTGGTACACCATGAAACTGATTTTTTGGGAAAGCAGTTTGGAAGGCCTGCCTGGGAATTGTATAATGGGCAGGCGATCTTGGCTGATCGTGTGTCTAGGCAGCTGCTGAGTGATCACATGACAACTCCCTCTCTGGATTTAAGTCCTACCTTTCCTTTGACCAACCGCAAATAG 2670 45.81 MPSWWGKSSSKDVKKSRESFIDTLHRKFRTSEGKPNSRSGGSPRNCNDTVSEHGSRSPALSRSVSPSKQVSRCQSFSERPQAQPLPLPGAQPAIVSRTDSGISISPKPRAERGLRPSSFLPLPRPACIRGRPNHTDLDADMGVGSVSSESSIDSTDPSDSRHRSPQATDYDLGTKAAAGTPSSVVIKDQSSTAPQPSFQEAKKPANISLSNHIFSTSPKRRPLSSHVPNLQVPYHGILCSAPESSMSSPSRSPMRGCSTEQIINNAIGAGKPYSDLTFPGSGHCSSPGSGYNSGHNSMGGDMSGQLFLQQSRGSPEYSPAPSPRMTSPGPSSRVHSGPVTPIHPRAGGMPMESLTSWPDEKQTHRLPLPPVSISNPPFSHSNSAATSPSVPRSPGRPDNPVSPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVQYYGSETVGDKLYIYLEYVSGGSIYKLLQEYGQLGELALRSYTQQILSGLAYLHAKSTVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPAIPDHLSHDGKDFVRQCLQRNPLHRLTAAQLLEHPFVKHAAPLERPISVSEHSDTNSGITNGVRTLGIEPVRNISILDSDRSAAHSSRLPTAGFHSSDIHIPRNLSCPVSPIGSPMVHSRSPQHRSGRMSPSPISSPRNTSGSSTPLTGGSGALPHQHLKQSLYLQECFGSMPKSSIGPFSNGSSYHDTNPDIFQGILPGSHIFSELVHHETDFLGKQFGRPAWELYNGQAILADRVSRQLLSDHMTTPSLDLSPTFPLTNRK 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6454165 6459444 - evm.model.ptg000001l.821 HCH5g0821 544973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0821 889 MobiDBLite consensus disorder prediction 742 777 - -
HCH5g0821 889 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 57 669 IPR050538 -
HCH5g0821 889 MobiDBLite consensus disorder prediction 24 180 - -
HCH5g0821 889 MobiDBLite consensus disorder prediction 736 781 - -
HCH5g0821 889 Pfam Protein kinase domain 408 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0821 889 CDD STKc_MEKK1_plant 406 663 - -
HCH5g0821 889 MobiDBLite consensus disorder prediction 34 81 - -
HCH5g0821 889 FunFam Mitogen-activated protein kinase kinase kinase 405 688 - -
HCH5g0821 889 ProSiteProfiles Protein kinase domain profile. 407 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0821 889 SUPERFAMILY Protein kinase-like (PK-like) 405 750 IPR011009 -
HCH5g0821 889 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524(InterPro)
HCH5g0821 889 SMART serkin_6 407 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0821 889 MobiDBLite consensus disorder prediction 281 317 - -
HCH5g0821 889 MobiDBLite consensus disorder prediction 375 392 - -
HCH5g0821 889 MobiDBLite consensus disorder prediction 281 409 - -
HCH5g0821 889 Gene3D Transferase(Phosphotransferase) domain 1 405 688 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0260 HCH-Chr14:30500614 HCH5g0821 HCH-Chr5:6454165 2.50E-97 dispersed
HCH4g0675 HCH-Chr4:4388153 HCH5g0821 HCH-Chr5:6454165 3.20E-91 dispersed
HCH5g0821 HCH-Chr5:6454165 HCH6g1609 HCH-Chr6:49234639 1.60E-71 dispersed
HCH13g0088 HCH-Chr13:549176 HCH5g0821 HCH-Chr5:6454165 7.90E-66 transposed
HCH14g0125 HCH-Chr14:22616578 HCH5g0821 HCH-Chr5:6454165 1.40E-122 transposed
HCH11g1235 HCH-Chr11:44550570 HCH5g0821 HCH-Chr5:6454165 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81518 PF00069 Pkinase 3.70E-71 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0821 K20717 - csv:101222716 1551.95