Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0825 ATGCAATCAGGGTTGAGCGGCGGCGGCGGCGGCGGTGGCGCTCCAGATTTCTACACCGCCGGCAGATCCATGGGAAACCCACCATCACATTCACAACCCAATAACCATAATAATTCGTTCAATATGAGATCGCAATTACAATCCACCACGAATTCTTCCTTGATCGATCCCACTTCCCATCAGCAGCAGATCTCTCGCCCTTCCTTGCTCGGAAAACGAAATCTCTCCGATCTCCATCAAACCCATCTCCAGAATCACCACCCTCTTAACGATCTCTTCCTCCGTTCCGTCAAGCCTCGAGCTTTCAATAATCATCTTTCGTCCCCTTTCTCTAGCTTGGATTTTTACTCCACCATGTCTTTACCTTCTTTCGACATTCAATCTCAATCTCTCCCGCAACAGCGGGTTTACTCCGGGACTAGTTCCAGTGCCCTTCTTCAACAACTCCGTCATCAACAACAGCAGCAACAGCAACAGCAGACGGTTCATTTTAATAACTGTACGGTCTCGGCGGCGGTTCCGGTGAAGGATTTGACCTTTGATTCGGAGAAGCAGATGATGGATCATCGTCTTCTGGAGTTGGAAAAAGAGCTTCTTGATGATAACGACGATGATGAAGGGAGTGATTCGGCTTCTGTTATTACTAATTCCAGCAGTGCTTGGTGTGAGACCATATATAATCTGATTAGTCCGAACCCGAATCCGAACTCGAACCCGGTTTCGACTTCGCCTACTTCCTCGGCTTCGTCTTCTGCGTCGTCGTCGTCATCATCGGTGGCTTCTCCTTCTTCGGATTGCTGGAAACAGTCCGTTATGGAGGCAGCAACGGCGATTTCCGAGGGGAAATTGGAAGCGGTGGATGAGATTCTAACACCCGTTTCTAGGGTTTCGAATTCGAAAGGTAATTCCGTTCAGAGATTGACGGAATATATGGTTTCGGCTCTGAAATCACGGGCGAATCCGGTGGAAAACCCTCCACCGGTGACGGAGCTTTTTGGGTCCGAGCATTCGGAATCGACGCAATTGCTTTACGATGTTTCTCCTTGTTTTAAACTCGCTTTCATGGCGGCGAATCTGGCGATCCTCGAAGCAATCGAAGAACAAGAAGATCAAAATCAAAACTTTAGCGTTTCGAAATTACACGTAGTGGATTTCGACATCGGACAAGGCTGTCAATATATGAATCTTCTTCATCTTCTCTCTTCTCGTAAAAAAGGAAACGTTTCCGTTAGCCTCACGACGGTAGCGGAAATCGAAACCGAAACCGAAATCGAGACTGAGGAGAAGTTGAAGGCAGTCGGCGATTCACTGACTGAACTCGCCGACCGAATCGGTGTTAGTTTCAAATTCAACGTCGTGGCGAGACAGAAAATCGGCGAACTGAGCCGGGAATCGCTCGGGTGCGAACCGGGGGAACCGTTAGCGGTGAATTTCGCTTTCAAACTATACAAAATGGCGGACGAGAGCGTGTCGACGGAGAATCCACGTGACGAGCTTCTTCGGCGAGTGAAGGGTTTAAATCCGGCGGTGGTAACGTTAATGGAACAAGAAATGAACATGAACACGGCGCCGTTCGTGGCGCGCGTGGCGGAATCGTGTGTTTATTACGGCTCGTTGTTCGATTCGATAGAATCAACGGTGCAGAGAGAGCATCCGGATAGAGTGAAATTGGAACAAGGGCTTGGTCGGAAATTGGCGAATTCGATTGCTTGTGAAGGGAGGGATCGAATTGAGAGGAATGAAGTTTACGGGAAGTGGAGAGCGAGAATGGGAATGGCGGGTTTTCGATCGAAGCCGATGAGTAGGAGTATCGCTGAATCGATGAAAAATCGACTGAGTTCCGGCTACCGAGTTAACCCAGGTTTCACTGTTAAGGAAGACAATGCCGGAATTTGTTTTGGTTGGATGGGTCGGACGCTCACTGTTACTTCTGCTTGGTCTTAA 1944 48.82 MQSGLSGGGGGGGAPDFYTAGRSMGNPPSHSQPNNHNNSFNMRSQLQSTTNSSLIDPTSHQQQISRPSLLGKRNLSDLHQTHLQNHHPLNDLFLRSVKPRAFNNHLSSPFSSLDFYSTMSLPSFDIQSQSLPQQRVYSGTSSSALLQQLRHQQQQQQQQQTVHFNNCTVSAAVPVKDLTFDSEKQMMDHRLLELEKELLDDNDDDEGSDSASVITNSSSAWCETIYNLISPNPNPNSNPVSTSPTSSASSSASSSSSSVASPSSDCWKQSVMEAATAISEGKLEAVDEILTPVSRVSNSKGNSVQRLTEYMVSALKSRANPVENPPPVTELFGSEHSESTQLLYDVSPCFKLAFMAANLAILEAIEEQEDQNQNFSVSKLHVVDFDIGQGCQYMNLLHLLSSRKKGNVSVSLTTVAEIETETEIETEEKLKAVGDSLTELADRIGVSFKFNVVARQKIGELSRESLGCEPGEPLAVNFAFKLYKMADESVSTENPRDELLRRVKGLNPAVVTLMEQEMNMNTAPFVARVAESCVYYGSLFDSIESTVQREHPDRVKLEQGLGRKLANSIACEGRDRIERNEVYGKWRARMGMAGFRSKPMSRSIAESMKNRLSSGYRVNPGFTVKEDNAGICFGWMGRTLTVTSAWS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6541362 6543305 + evm.model.ptg000001l.825 HCH5g0825 544977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0825 647 MobiDBLite consensus disorder prediction 24 66 - -
HCH5g0825 647 MobiDBLite consensus disorder prediction 232 264 - -
HCH5g0825 647 MobiDBLite consensus disorder prediction 1 66 - -
HCH5g0825 647 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 219 646 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH5g0825 647 ProSiteProfiles GRAS family profile. 258 647 IPR005202 -
HCH5g0825 647 Pfam GRAS domain family 268 646 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0825 HCH-Chr5:6541362 HCH6g0857 HCH-Chr6:43379011 1.90E-58 dispersed
HCH5g0825 HCH-Chr5:6541362 HCH2g0668 HCH-Chr2:50476335 1.00E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33628 PF03514 GRAS 2.00E-105 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0825 K27748 - csv:101214171 711.064