Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0835 ATGGCCGGAGAAAATGACTGGGATCTTTACGCCGTCGTCCGGAGTTGCAAATCCGCCGCCGCCAATGCAACACCCGTGGAAGACACTCTATCTTGTCTTGCTTCTTTAACCTTCGAAGAAGAAGATAAAAACGACTTCTCATTTTCTTTTACAAACATGCTTGAAACCGAAACCGAAACCGAAATCGAAAACGGACCACTCAATGACTTCCATGAATTACAAGCAGCCTACATGTCTTTTCTTCCTAACCCCGCCGCCTCCACCGCCACCACCCCAGGAAATATCACAAACCCATCTAATTCTCACAACTTTTCCGTTCAAACCCCTCATATTATTCCGCCGGCTCTACAACAACAACTGCAACCACCACCACCACCACAACCGCAGCAGCACCTTTATCCACCACCGCCACCGCCGCTTTCTTCATTTCAACGGGAGTTTCCTTGTTCACCAATGACGCAATCTCATACACCCAAATCCAGAAAAAGGAAGAACCAACAGAAGAGGTCCATATGCCATGTAACAGCAGAAAATCTCTCTACAGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGTTCTCCATATCCTAGGAATTATTACCGTTGCAGTAGCTCCAAAGGGTGTGGGGCTAGAAAACAAGTGGAAAGAAACAACGCCGATCCCGAGACTTTCATCATCACATATTCCGGCGATCATTCTCACCCTCGTCCCAGTCACCGGAGCTCGCTCGCCGGATGTTCCAGAAATAAGTTGATCTCTGCCAAGAATCCGGAACCATCACGCTCCTCCTTCGTACCTGGTGGCTCCTGCTCCTCCCCTTCCTCTCCGTCAACGCCGTTGATTTCGATATCCAAGAACGACGGCGTTGACCGGGAGAAAGAGGGGGAGCCGTTGGAAGATATGACGGCGGAAAGTAGTGATGATGAGGAAGAGGAAGAAGATGACATTTTGATCCCGAACTTGTCAATGAGAGATGAAATCTTTGTGGGTATAGACGAGGTTGGTTGTAGCCCTAAACGGCGGTCATAA 1041 48.7 MAGENDWDLYAVVRSCKSAAANATPVEDTLSCLASLTFEEEDKNDFSFSFTNMLETETETEIENGPLNDFHELQAAYMSFLPNPAASTATTPGNITNPSNSHNFSVQTPHIIPPALQQQLQPPPPPQPQQHLYPPPPPPLSSFQREFPCSPMTQSHTPKSRKRKNQQKRSICHVTAENLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERNNADPETFIITYSGDHSHPRPSHRSSLAGCSRNKLISAKNPEPSRSSFVPGGSCSSPSSPSTPLISISKNDGVDREKEGEPLEDMTAESSDDEEEEEDDILIPNLSMRDEIFVGIDEVGCSPKRRS 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6696951 6698377 + evm.model.ptg000001l.835 HCH5g0835 544987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0835 346 Pfam WRKY DNA -binding domain 182 239 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0835 346 ProSiteProfiles WRKY domain profile. 175 241 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0835 346 SUPERFAMILY WRKY DNA-binding domain 175 241 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0835 346 SMART WRKY_cls 180 240 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0835 346 MobiDBLite consensus disorder prediction 84 115 - -
HCH5g0835 346 MobiDBLite consensus disorder prediction 305 320 - -
HCH5g0835 346 MobiDBLite consensus disorder prediction 256 288 - -
HCH5g0835 346 MobiDBLite consensus disorder prediction 256 325 - -
HCH5g0835 346 MobiDBLite consensus disorder prediction 116 144 - -
HCH5g0835 346 FunFam WRKY transcription factor 22 163 234 - -
HCH5g0835 346 MobiDBLite consensus disorder prediction 290 304 - -
HCH5g0835 346 MobiDBLite consensus disorder prediction 84 170 - -
HCH5g0835 346 Gene3D WRKY domain 163 233 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0835 346 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 7 316 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0835 HCH-Chr5:6696951 HCH7g0124 HCH-Chr7:825256 9.60E-25 dispersed
HCH5g0835 HCH-Chr5:6696951 HCH6g1221 HCH-Chr6:46628616 7.30E-33 wgd
HCH5g0835 HCH-Chr5:6696951 HCH7g1655 HCH-Chr7:48631499 7.50E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33630 PF03106 WRKY 2.50E-25 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0835 - - - 0.0