Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0835 | ATGGCCGGAGAAAATGACTGGGATCTTTACGCCGTCGTCCGGAGTTGCAAATCCGCCGCCGCCAATGCAACACCCGTGGAAGACACTCTATCTTGTCTTGCTTCTTTAACCTTCGAAGAAGAAGATAAAAACGACTTCTCATTTTCTTTTACAAACATGCTTGAAACCGAAACCGAAACCGAAATCGAAAACGGACCACTCAATGACTTCCATGAATTACAAGCAGCCTACATGTCTTTTCTTCCTAACCCCGCCGCCTCCACCGCCACCACCCCAGGAAATATCACAAACCCATCTAATTCTCACAACTTTTCCGTTCAAACCCCTCATATTATTCCGCCGGCTCTACAACAACAACTGCAACCACCACCACCACCACAACCGCAGCAGCACCTTTATCCACCACCGCCACCGCCGCTTTCTTCATTTCAACGGGAGTTTCCTTGTTCACCAATGACGCAATCTCATACACCCAAATCCAGAAAAAGGAAGAACCAACAGAAGAGGTCCATATGCCATGTAACAGCAGAAAATCTCTCTACAGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGTTCTCCATATCCTAGGAATTATTACCGTTGCAGTAGCTCCAAAGGGTGTGGGGCTAGAAAACAAGTGGAAAGAAACAACGCCGATCCCGAGACTTTCATCATCACATATTCCGGCGATCATTCTCACCCTCGTCCCAGTCACCGGAGCTCGCTCGCCGGATGTTCCAGAAATAAGTTGATCTCTGCCAAGAATCCGGAACCATCACGCTCCTCCTTCGTACCTGGTGGCTCCTGCTCCTCCCCTTCCTCTCCGTCAACGCCGTTGATTTCGATATCCAAGAACGACGGCGTTGACCGGGAGAAAGAGGGGGAGCCGTTGGAAGATATGACGGCGGAAAGTAGTGATGATGAGGAAGAGGAAGAAGATGACATTTTGATCCCGAACTTGTCAATGAGAGATGAAATCTTTGTGGGTATAGACGAGGTTGGTTGTAGCCCTAAACGGCGGTCATAA | 1041 | 48.7 | MAGENDWDLYAVVRSCKSAAANATPVEDTLSCLASLTFEEEDKNDFSFSFTNMLETETETEIENGPLNDFHELQAAYMSFLPNPAASTATTPGNITNPSNSHNFSVQTPHIIPPALQQQLQPPPPPQPQQHLYPPPPPPLSSFQREFPCSPMTQSHTPKSRKRKNQQKRSICHVTAENLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERNNADPETFIITYSGDHSHPRPSHRSSLAGCSRNKLISAKNPEPSRSSFVPGGSCSSPSSPSTPLISISKNDGVDREKEGEPLEDMTAESSDDEEEEEDDILIPNLSMRDEIFVGIDEVGCSPKRRS | 346 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 6696951 | 6698377 | + | evm.model.ptg000001l.835 | HCH5g0835 | 544987 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0835 | 346 | Pfam | WRKY DNA -binding domain | 182 | 239 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH5g0835 | 346 | ProSiteProfiles | WRKY domain profile. | 175 | 241 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH5g0835 | 346 | SUPERFAMILY | WRKY DNA-binding domain | 175 | 241 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH5g0835 | 346 | SMART | WRKY_cls | 180 | 240 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH5g0835 | 346 | MobiDBLite | consensus disorder prediction | 84 | 115 | - | - | |
HCH5g0835 | 346 | MobiDBLite | consensus disorder prediction | 305 | 320 | - | - | |
HCH5g0835 | 346 | MobiDBLite | consensus disorder prediction | 256 | 288 | - | - | |
HCH5g0835 | 346 | MobiDBLite | consensus disorder prediction | 256 | 325 | - | - | |
HCH5g0835 | 346 | MobiDBLite | consensus disorder prediction | 116 | 144 | - | - | |
HCH5g0835 | 346 | FunFam | WRKY transcription factor 22 | 163 | 234 | - | - | |
HCH5g0835 | 346 | MobiDBLite | consensus disorder prediction | 290 | 304 | - | - | |
HCH5g0835 | 346 | MobiDBLite | consensus disorder prediction | 84 | 170 | - | - | |
HCH5g0835 | 346 | Gene3D | WRKY domain | 163 | 233 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH5g0835 | 346 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 7 | 316 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g0835 | HCH-Chr5:6696951 | HCH7g0124 | HCH-Chr7:825256 | 9.60E-25 | dispersed | |
HCH5g0835 | HCH-Chr5:6696951 | HCH6g1221 | HCH-Chr6:46628616 | 7.30E-33 | wgd | |
HCH5g0835 | HCH-Chr5:6696951 | HCH7g1655 | HCH-Chr7:48631499 | 7.50E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33630 | PF03106 | WRKY | 2.50E-25 | CL0274 | HCH | TF |
Pathway information
