Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0854 ATGAGTTTGAAAAGAGAGTTTCTCCTCATTTTTGCTGCAATATTATTCTTTCAGGCTGTTTTTTCTCATGTTATTTCTGAGCCCATTGAAGAGAAGCAAGCTTTGCTCGATTTTATCAGCAAAATGGGTCATTCACACTTGCTTAACTGGAATAAGAGCACTTCTTTGTGCAAAGATTGGATGGGAGTTTCTTGCAACAATGACCAATCCAGAGTTATAGCTCTGAGATTGCCTGAAGTTGGTTTACATGGTTTAGTCCCTATGAACACTCTTGGTAGACTATCAGCACTTCAAATTCTAAGTCTCAGAATGAATAACTTATCAGGGCCATTCCCTTCTGACTTCCTAAAGCTGAGAAATTTGAACTCACTTTACTTGCAATGCAACAAGTTTTCCAGTCCATTGCCTTTGAATTTCTCAGTATGGAAGAATCTTAGCATCATTGATTTATCTAGCAATGACTTCAATGGGAGCATCCCTTCTACGATTTCGAATATGACCAATCTCATTGCTTTGAATCTTGCTAATAACTCCTTTTCTGGTGAAATACCTGACCTCAATCTTCCCACTTTGCAAGAGTTAGATCTTTCTAATAATAATCTCACAGGACATGTGCCTCAATCCCTTCAAAGATTTCCAAGTCGGGCATTTTCCGGTAACGATCTTTTGTCCGAAAATGCTTTTTCTGTAGCTCCTCCAGAGCAGTCTCTCAATGCCAAGTCTTCAAAGAAGGGCACATCACTTGGTGAAGCAGCAATATTAGGTATTGTAATTGGTGGTTCTGCAATGGGCTTTGTTGCAGCAGTAATTCTGATGATTGTTTGCTGCTCAAATAGGGGAATGAAAAGTAATGCTTCACCAAAACTGGATAAGAAAGAAATCTCTGTGAGTAAAAAAGTGTTTGAGACACAAAACAATAATAACAATCTCAAGTTTTTCCAGAACTATAGACTTGCATTTGACTTGGAAGACTTGTTGAGAGCATCTTCTGAAGTACTCGGCAAAGGAACGTCCGGTACAACCTACAAGGCAACTTTAGAAGATGCAAGCACAGTGGTGGTGAAGAGGTTGAAGGAAGTAAGTCTTTCGAAAAGGGAATTCGAGCAGCAGATGGAGCTGCTCGGGAATATTGAACATGAAAATGTCTGTGCCTTAAGGGCATATTACCATTCAAAGGATGAAAAACTCATGGTGTTCGATTTCTACGAACACGGTAGCATCTCTGCAATGTTGCATGGTGCAAGAGAGAAGGGCCGCTCCCCTCTCGATTGGGAAAGTCGACTAAGAATCGCTATCGGTGCAGCAAGAGGAATTGCACATATCCACTCAGAGAATTGTGGGAAACTTGTTCATGGAAACATAAAGGCCTCTAATATCTTCCTCAACTCTGAAGGATATGGTTGTGTATCTGATGTTGGTATTGCAGCATTGATGAACCTCATGGCGCCACCAGCGACAAGGGCTGCTGGGTATCGAGCTCCTGAAGTCAAGGACTCAAGGAAAGCATCCCATGCATCTGATACATATAGTTTCGGGGTCGTGCTGCTAGAGCTCCTCACTGGGAAATTTCCCTTGCATACAAAGGGTGGTGACCAGATTATTCACTTGGTGAGGTGGGTGAATGCTGTGGTCAGAGAAGAATGGACTGCAGAAGTGTTTGATGTGGAGCTTTTGAGATTTCCAAACATAGAAGAGGAGATGGTGGAAGTGCTGCAAATAGGACTGTCTTGCGTGGTAAGAGCACCCGATGATAGACCGAAAATGGCCGATGTAGCAACCCGATTAGAGCAAGTTCGCCAGGTAAACACCGGAAACCAACCAGAACTGCCATCGGAACATGGAGCGGAAAATTTAACTCCACTTCAAGTGAATGTGACTGAGGGTGAGGCTGGATCATCATCAAGATCAAATTGA 1914 42.37 MSLKREFLLIFAAILFFQAVFSHVISEPIEEKQALLDFISKMGHSHLLNWNKSTSLCKDWMGVSCNNDQSRVIALRLPEVGLHGLVPMNTLGRLSALQILSLRMNNLSGPFPSDFLKLRNLNSLYLQCNKFSSPLPLNFSVWKNLSIIDLSSNDFNGSIPSTISNMTNLIALNLANNSFSGEIPDLNLPTLQELDLSNNNLTGHVPQSLQRFPSRAFSGNDLLSENAFSVAPPEQSLNAKSSKKGTSLGEAAILGIVIGGSAMGFVAAVILMIVCCSNRGMKSNASPKLDKKEISVSKKVFETQNNNNNLKFFQNYRLAFDLEDLLRASSEVLGKGTSGTTYKATLEDASTVVVKRLKEVSLSKREFEQQMELLGNIEHENVCALRAYYHSKDEKLMVFDFYEHGSISAMLHGAREKGRSPLDWESRLRIAIGAARGIAHIHSENCGKLVHGNIKASNIFLNSEGYGCVSDVGIAALMNLMAPPATRAAGYRAPEVKDSRKASHASDTYSFGVVLLELLTGKFPLHTKGGDQIIHLVRWVNAVVREEWTAEVFDVELLRFPNIEEEMVEVLQIGLSCVVRAPDDRPKMADVATRLEQVRQVNTGNQPELPSEHGAENLTPLQVNVTEGEAGSSSRSN 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6927688 6929840 + evm.model.ptg000001l.854 HCH5g0854 545006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0854 637 Gene3D Transferase(Phosphotransferase) domain 1 403 613 - -
HCH5g0854 637 MobiDBLite consensus disorder prediction 600 637 - -
HCH5g0854 637 FunFam pollen receptor-like kinase 1 296 401 - -
HCH5g0854 637 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524(InterPro)
HCH5g0854 637 Gene3D Ribonuclease Inhibitor 29 268 IPR032675 -
HCH5g0854 637 SUPERFAMILY Protein kinase-like (PK-like) 330 596 IPR011009 -
HCH5g0854 637 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 402 608 - -
HCH5g0854 637 Pfam Leucine Rich Repeat 168 185 IPR001611 GO:0005515(InterPro)
HCH5g0854 637 Pfam Leucine Rich Repeat 144 166 IPR001611 GO:0005515(InterPro)
HCH5g0854 637 Pfam Leucine Rich Repeat 97 118 IPR001611 GO:0005515(InterPro)
HCH5g0854 637 Pfam Leucine Rich Repeat 191 211 IPR001611 GO:0005515(InterPro)
HCH5g0854 637 ProSiteProfiles Protein kinase domain profile. 327 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0854 637 FunFam Probable inactive receptor kinase RLK902 28 187 - -
HCH5g0854 637 PANTHER OS05G0588300 PROTEIN 15 608 IPR050994 -
HCH5g0854 637 Gene3D Phosphorylase Kinase; domain 1 292 401 - -
HCH5g0854 637 Pfam Protein tyrosine and serine/threonine kinase 330 595 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g0854 637 SUPERFAMILY L domain-like 45 212 - -
HCH5g0854 637 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0563 HCH-Chr5:3886949 HCH5g0854 HCH-Chr5:6927688 8.80E-167 dispersed
HCH5g0854 HCH-Chr5:6927688 HCH9g0846 HCH-Chr9:5984425 9.10E-122 dispersed
HCH11g1282 HCH-Chr11:44872426 HCH5g0854 HCH-Chr5:6927688 3.90E-181 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81519 PF00069 Pkinase 7.10E-32 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0854 - - - 0.0