Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0868 ATGACTTACCTGCAAGAGAGAATTGTGAGGTTTAATGATTGGAGGTCAGATGAAACTTCAAGGAGGTTGTATTCTGCAGATACCGCTTTAAATGCAGGAAAGATTGGGACAAGAGCTGACTCGGTTACGGAAAAGCCTCATAAAGGCTTGGCAGCTGGTTCTTACAGGATCAATAAAATTAAGAAGTCCTTGAAATCATCTTCCTTCAATAAATTTATGTCCAAAGGTTTGGGATCTGGAAAGAAAGTACTTGACCCTCAGGGGCCCTTTCTCCAAAAGTGGAATAAGATATTCGTATTGTCTTGTGTGATCGCAGTCTCATTGGATCCTTTGTTCTTTTATGTTCCCGTGACTGACGATGACAAGAAGTGTCTAGGGTTGGACAAAAAGATGGAGATTACAGCAAGTGTTCTACGTTCATTTACAGACATATTTTATATATTACATATTATTTTTCAATTTCGTACGGGATTTATTGCTCCTTCTTCTAGAGTATTTGGAAGAGGTGTTTTAGTAGAAGATGCTTGGGAGATAGCAAAGAGATATCTATCATCATACTTTTTGATTGACATTCTTGCAGTCCTCCCACTTCCACAAGCAGCGATTCTGATAATAGTTCCAAAGCTGGGAGGCTCAAGGTCTTTGAATACCAAGAACTGGCTGAAATACATCGTTGTCTTTCAATATGTGCCGAGGTTTCTTAGAATCTACCCTCTATATAAAGAAGTTACAAGAACTTCTGTACTCACTGAAACCGCATGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGCTAGCTAGTCACGTCTTTGGAGCATTCTGGTACTTGTTTTCTATAGAACGGGAAACTGTATGCTGGCAGAAAGCTTGTCGTTGGCAGACTGGTTGTGATATTAGCAATTCACTGTATTGTGACCTCAATCCAGGAAACAACATATTTTTGAACAGTTCATGTCCTATAATAGAGGCAAACAAAACACTTTTTGATTTTGGAATATTTCTTGATGCTCTTCAGTCTGGTGTTGTGGAGTCAAAGGATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGTTCTCTTGGTCAAAATCTCCAAACAAGCACATACGTGTGGGAAATTTGCTTTGCTGTTTTCATCTCCATCTCTGGCTTAGTCTTGTTTTCATTTCTCATTGGGAATATGCAGACATATTTGCAGTCCACCACTACTAGGTTAGAAGAAATGAGGGTTAGAAGGAGAGATGCTGAACAGTGGATGTCCCATCGTTTGCTCCCTGAGAGCCTGCGGGAGCGCATCAGGAGTTATGAACAGTACAAGTGGCAGGAAACTAGAGGTGTTGATGAAGAGAACCTTGTTCGAAATCTTCCCAAAGATCTCAGAAGGGACATAAAACGCCATCTCTGCTTGTCTCTACTAATGAGGGTACCCATATTTGAAAAAATGGATGAACAATTGTTGGACGCAATGTGTGACCGACTCAAGCCTGTACTCTACACAGAGGAAAGTTATATTGTGAGGGAAGGGGACCCTGTAGATGAGATGATTTTCATTATGCGCGGCAAGTTATTGTCTGTGACTACAAATGGCGGAAGAACTGGTTTTTTCAATTCTGAACACCTTAAGGCTGGTGATTTCTGTGGAGAAGAGTTACTGACATGGGCTCTGGATCCACATTCCTCATCCAATCTGCCGATTTCAACTAGAACTGTTCGTACCCTTTCGGAAGTTGAGGCATTTGCTTTAAAGGCTGATGATCTCAAGTTTGTCGCCTCACAGTTCCGACGGCTCCACAGCAAGCAGCTGCGCCACACTTTCAGGTTTTATTCGCAACAATGGAGGACATGGGCAGCTTGTTTTCTACAAGCAGCCTGGCGTCGATACAGTAGAAAGAAGCATGAACAGTCTCTTTTGGAAGAAGAGAACAGATTAAAAGATGCATTGACCAAGACAGGTGGGAGCTCTCCTAGTTTAGGTGCCACCATATACGCATCAAGATTTGCAGCTAATATACTTCGAACCATACGACGCACAAGTTCACGGAAGTCTAGGATGCCAGAGAGAATACCGCCCATATTGCTTCAGAAACCGGCAGAGCCTGATTTTACTTCTGAAGAGATGAGTTGA 2142 41.92 MTYLQERIVRFNDWRSDETSRRLYSADTALNAGKIGTRADSVTEKPHKGLAAGSYRINKIKKSLKSSSFNKFMSKGLGSGKKVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVTDDDKKCLGLDKKMEITASVLRSFTDIFYILHIIFQFRTGFIAPSSRVFGRGVLVEDAWEIAKRYLSSYFLIDILAVLPLPQAAILIIVPKLGGSRSLNTKNWLKYIVVFQYVPRFLRIYPLYKEVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWQKACRWQTGCDISNSLYCDLNPGNNIFLNSSCPIIEANKTLFDFGIFLDALQSGVVESKDFPQKFFYCFWWGLRNLSSLGQNLQTSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRSYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHLCLSLLMRVPIFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFLQAAWRRYSRKKHEQSLLEEENRLKDALTKTGGSSPSLGATIYASRFAANILRTIRRTSSRKSRMPERIPPILLQKPAEPDFTSEEMS 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7137778 7143549 + evm.model.ptg000001l.868 HCH5g0868 545020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0868 713 FunFam Cyclic nucleotide-gated ion channel 1 481 599 - -
HCH5g0868 713 Gene3D Jelly Rolls 481 601 IPR014710 -
HCH5g0868 713 Coils Coil 635 655 - -
HCH5g0868 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 61 686 - -
HCH5g0868 713 SMART cnmp_10 483 614 IPR000595 -
HCH5g0868 713 Gene3D - 97 407 - -
HCH5g0868 713 FunFam Cyclic nucleotide-gated ion channel 1 410 474 - -
HCH5g0868 713 Gene3D Helix hairpin bin 409 474 - -
HCH5g0868 713 ProSiteProfiles cAMP/cGMP binding motif profile. 483 567 IPR000595 -
HCH5g0868 713 Pfam Cyclic nucleotide-binding domain 504 595 IPR000595 -
HCH5g0868 713 CDD CAP_ED 483 614 IPR000595 -
HCH5g0868 713 SUPERFAMILY cAMP-binding domain-like 412 605 IPR018490 -
HCH5g0868 713 SUPERFAMILY Voltage-gated potassium channels 85 405 - -
HCH5g0868 713 Pfam Ion transport protein 96 410 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0311 HCH-Chr10:2559090 HCH5g0868 HCH-Chr5:7137778 1.10E-211 dispersed
HCH11g1302 HCH-Chr11:45009883 HCH5g0868 HCH-Chr5:7137778 3.20E-157 dispersed
HCH11g1303 HCH-Chr11:45021765 HCH5g0868 HCH-Chr5:7137778 6.50E-110 dispersed
HCH3g0019 HCH-Chr3:165911 HCH5g0868 HCH-Chr5:7137778 8.10E-109 dispersed
HCH5g0868 HCH-Chr5:7137778 HCH9g0186 HCH-Chr9:1095262 2.90E-209 dispersed
HCH11g1301 HCH-Chr11:45003747 HCH5g0868 HCH-Chr5:7137778 1.50E-148 wgd
HCH5g0868 HCH-Chr5:7137778 HCH7g1699 HCH-Chr7:48882630 1.20E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0868 K05391 - csv:101221781 1269.22