Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0877 ATGAATTACGATAAACTCAAGTCTCCGTCGATAATCGGCGACGATGACAATAACCATCCCACATCAACACCATCATTTCCATCACCACTACCTCCACGCAATACTCGAAAGAAGAATGTCATTCTCATTTCCTTATTTTCAATTTTTCTAATTGTTGCCTCTGCCGTATCCGCTGTCGTGATAGTCCGACAGCGGATAGGAGAATCGGGACATGACAGTCCCGATTTGTCTCGGAAACCGACACAAGCAATTTCCCGAGCTTGTAGCAGGACTCAGTACCCAACGCTATGCGTCACCTCGCTCTTGAATTTCCCGGGATCTACCACTGCTAACGTTCAAGACCTTGTTCATATCTCATTGAATATGACGCTGCAAAAACTAAACAAAGCTTTGTATTTAACTTCTCAAATCTCTTCCGTTCCGATGGATCCTCTCGAACGCTCGGCGTACGATGATTGCCTCGAACTCCTCGACGATGCCGCCGACGCCTTCTCCCGCTCGCTCTTCTCCGTCGCGGGGCCGCAGCAATCCGGTGGGTCAACTCATGACGTGTTGACTTGGCTTAGCTCAGCGTTGACTTATCAGGACACGTGTTTCGAGGGATTTACCGATGTCAACGGGACGGTCAAGGACCAAATGGCGGTGAAGCTGAATGAGTTATCACAGTTGATCAGTAATTCTCTAGCGATATTTTCTGGGTTTGGCAGCCGGACAGATGATTTTGCTGGTGTCCCAGTACAGAATCGGCGGCGGTTGATGGAAAGCCAGTGGCCACCGGAGAATGCTGACACCGGGGAGAGATTTCCGGCTTGGGTGAATCGGAAGGATAGACGGTTATTGGGTTCACCGATATCGTCAATACAGGCGGATATCGTCGTGGCGAAGGACGGAAGCGGGAAGTATAAGACGGTGGCGGAGGCGATAGTGGCAGCGCCGTCGTCGAGTGGTCGGCGGACGATCATCTACGTGAAGGCTGGAAGGTATGAGGAGGAAGATTTGAAGATAGGAAGGAAGAAAACAAACTTGATGTTTGTTGGAGATGGTAAGGGCATAACAGTCATTTCAGGTGGTAAAAGTGTTTACGACAAAGTCACCACTTTTCGCACCGCCACCTTTGCTGCTTCCGGGACTGGAATCATTCTACGTGACATGACATTTGAAAACTCCGCCGGACCGGGCAAACACCAAGCCGTCGCCCTTCGTGTTAGCGCCGATCACGCCGTCGTGTTCAGGTGCAACATAATTGGTTATCAAGACACTCTTTATGTTCACTCTAATCGTCAATTCTACCGAGAGTGTGACATCTATGGCACCGTCGATTTCATCTTCGGCAACGCCGTCGTCGTCTTTCAAAGCTGTAATATCTACGCTCGGAAACCAATGCCGCAGCAGAAAAACACAATCACCGCCCAAAACCGGAAGGACCCGAATCAAAACACCGGAATCTCCATCCATGCATGCAGAATCTTGGCCACTTCCGATTTGGAAGCTTCCAAAGGTAGTTATCCAACGTTTCTCGGCCGTCCGTGGAAATTATACTCTAGGGTGGTGATCATGGTATCTTCCATCGGTGATCATGTCCATCCACGTGGCTGGCTTGAGTGGCAAGGATCATTTGCTTTGGATACTTTATATTATGGAGAGTATATGAATTCCGGGCCGGGTGCAGCAGTTGGTCAACGGGTCAAGTGGCCCGGGTACCGGGTCATAACATCCACTATTGAAGCTGGTAAATTCACCGTGGGTCAATTTATATTCGGCTCGGCTTGGTTGCCTTCGACCGGCGTCTCCTTCTCAGCCGGGTTATCAGCTAACTAA 1818 49.72 MNYDKLKSPSIIGDDDNNHPTSTPSFPSPLPPRNTRKKNVILISLFSIFLIVASAVSAVVIVRQRIGESGHDSPDLSRKPTQAISRACSRTQYPTLCVTSLLNFPGSTTANVQDLVHISLNMTLQKLNKALYLTSQISSVPMDPLERSAYDDCLELLDDAADAFSRSLFSVAGPQQSGGSTHDVLTWLSSALTYQDTCFEGFTDVNGTVKDQMAVKLNELSQLISNSLAIFSGFGSRTDDFAGVPVQNRRRLMESQWPPENADTGERFPAWVNRKDRRLLGSPISSIQADIVVAKDGSGKYKTVAEAIVAAPSSSGRRTIIYVKAGRYEEEDLKIGRKKTNLMFVGDGKGITVISGGKSVYDKVTTFRTATFAASGTGIILRDMTFENSAGPGKHQAVALRVSADHAVVFRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAVVVFQSCNIYARKPMPQQKNTITAQNRKDPNQNTGISIHACRILATSDLEASKGSYPTFLGRPWKLYSRVVIMVSSIGDHVHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTIEAGKFTVGQFIFGSAWLPSTGVSFSAGLSAN 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7247690 7251843 + evm.model.ptg000001l.877 HCH5g0877 545029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0877 605 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 233 IPR035513 -
HCH5g0877 605 PANTHER PECTINESTERASE 41 593 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH5g0877 605 CDD PMEI-like_3 87 236 - -
HCH5g0877 605 NCBIfam pectinesterase inhibitor domain 60 232 IPR006501 GO:0004857(InterPro)
HCH5g0877 605 SUPERFAMILY Pectin lyase-like 287 601 IPR011050 -
HCH5g0877 605 Pfam Plant invertase/pectin methylesterase inhibitor 83 230 IPR006501 GO:0004857(InterPro)
HCH5g0877 605 MobiDBLite consensus disorder prediction 1 32 - -
HCH5g0877 605 ProSitePatterns Pectinesterase signature 2. 435 444 IPR033131 -
HCH5g0877 605 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 234 IPR035513 -
HCH5g0877 605 SMART PMEI_2 79 230 IPR006501 GO:0004857(InterPro)
HCH5g0877 605 Gene3D - 284 602 IPR012334 -
HCH5g0877 605 FunFam Pectinesterase 284 602 - -
HCH5g0877 605 Pfam Pectinesterase 290 587 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1042 HCH-Chr4:6698670 HCH5g0877 HCH-Chr5:7247690 8.20E-135 dispersed
HCH4g1556 HCH-Chr4:12094256 HCH5g0877 HCH-Chr5:7247690 3.30E-123 dispersed
HCH5g0877 HCH-Chr5:7247690 HCH6g0034 HCH-Chr6:485787 1.60E-123 dispersed
HCH11g1314 HCH-Chr11:45155496 HCH5g0877 HCH-Chr5:7247690 3.20E-214 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0877 - - - 0.0